2991 (Tp_CCCH22) DnaQ_like_exo superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
2991 chr_2 (Tp_CCCH22) DnaQ_like_exo superfamily 2441341 2443716 - DnaQ_like_exo superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7452931 Thaps2991.2, Thaps2991.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0065

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0133
 0.40

Most Highly Correlated Transcripts

22768

hypothetical protein
0.9327

bd794

(bd794) NA
0.8902

bd467

(bd467) Cytochrome_b_N
0.8809

bd1378

(bd1378) atpI
0.8763

270348

hypothetical protein
0.8753

bd1290

(bd1290) atpH
0.8748

bd2088

(bd2088) rbcL
0.8697

bd598

(bd598) atpG
0.869

270306

hypothetical protein
0.8645

bd1092

(bd1092) NA
0.8632

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 80.9925 1.11E-17 516 - 688 superfamily 263941

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Cre07.g340750.t1.2 Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003676 GO:0004527 GO:0005622 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0004527

exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

Add comment

Log in to post comments