30454 BrixThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
30454	chr_19a_19	Brix	300568	301637	+	Brix

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446292	Thaps30454.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0221

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0284	0.26	0.16 0.049

Most Highly Correlated Transcripts

34413 RRM_ABT1_like 0.9242	2392 hypothetical protein 0.9239	23242 PRK00142 0.9238	41419 (RT4) RpsD 0.921	23210 hypothetical protein 0.9179	10853 hypothetical protein 0.9168
268027 Met_10 0.9137	22334 hypothetical protein 0.9129	24180 PhyH 0.9125	4372 hypothetical protein 0.9122

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Brix		Brix domain; Brix domain.	cl00935	194.792	2.85E-61	96 - 270	specific	252591
Brix superfamily		Brix domain; Brix domain.	-	194.792	2.85E-61	96 - 270	superfamily	260706

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATR_51007	PHATR_51007	198809	321149	72820	Cre10.g454100.t1.2	AT1G63780.1	481255

KEGG

KEGG description	KEGG Pathway
Ribosome biogenesis in eukaryotes	map03008

GO Terms

Not available -

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