30950 Glyco_hydro_47
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
30950 chr_1 Glyco_hydro_47 2103939 2107876 - Glyco_hydro_47

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0272

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0022
 0.44

Most Highly Correlated Transcripts

12500

SNF2_N
0.9497

263191

PLN03076
0.942

8518

hypothetical protein
0.9399

262607

WD40 superfamily
0.9358

35929

(MAPKKK) S_TKc
0.9341

596

Adaptin_N
0.933

268454

CAP_ED
0.9323

264679

Syja_N
0.9298

262171

CAP_ED
0.9285

263947

SNF2_N
0.9276

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Glyco_hydro_47 Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyse the... cl08327 382.714 4.51E-121 445 - 874 specific 250690
Glyco_hydro_47 superfamily Glycosyl hydrolase family 47; Members of this family are alpha-mannosidases that catalyse the... - 382.714 4.51E-121 445 - 874 superfamily 263593

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_52346 PHATRDRAFT_52346 189169 184255 434516 Cre06.g301600.t1.1 AT5G43710.1 310282

KEGG

KEGG description KEGG Pathway
Protein processing in endoplasmic reticulum map04141

GO Terms

GO:0004182 GO:0006508 GO:0004571 GO:0005509 GO:0006487 GO:0016020 GO:0004553 GO:0008933 GO:0015923 GO:0015924 GO:0015925 GO:0015926 GO:0015927 GO:0015928 GO:0015929 GO:0016160 -

GO:0004182

NA

Details: 
NA
GO Category: 
NA

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0004571

mannosyl-oligosaccharide 1,2-alpha-mannosidase activity

Details: 
Catalysis of the hydrolysis of the terminal (1->2)-linked alpha-D-mannose residues in the oligo-mannose oligosaccharide Man(9)(GlcNAc)(2).
GO Category: 
MF

GO:0005509

calcium ion binding

Details: 
Interacting selectively and non-covalently with calcium ions (Ca2+).
GO Category: 
MF

GO:0006487

protein N-linked glycosylation

Details: 
A protein glycosylation process in which a carbohydrate or carbohydrate derivative unit is added to a protein via the N4 atom of peptidyl-asparagine, the omega-N of arginine, or the N1' atom peptidyl-tryptophan.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0004553

hydrolase activity, hydrolyzing O-glycosyl compounds

Details: 
Catalysis of the hydrolysis of any O-glycosyl bond.
GO Category: 
MF

GO:0008933

lytic transglycosylase activity

Details: 
Catalysis of the specific cleavage of the beta-(1->4) glycosidic linkage between N-acetylmuramyl and N-acetylglucosaminyl residues in peptidoglycan, with the concomitant formation of 1,6-anhydro-N-acetylmuramyl residues.
GO Category: 
MF

GO:0015923

mannosidase activity

Details: 
Catalysis of the hydrolysis of mannosyl compounds, substances containing a group derived from a cyclic form of mannose or a mannose derivative.
GO Category: 
MF

GO:0015924

mannosyl-oligosaccharide mannosidase activity

Details: 
Catalysis of the hydrolysis of the terminal alpha-D-mannose residues in oligo-mannose oligosaccharides.
GO Category: 
MF

GO:0015925

galactosidase activity

Details: 
Catalysis of the hydrolysis of galactosyl compounds, substances containing a group derived from a cyclic form of galactose or a galactose derivative.
GO Category: 
MF

GO:0015926

glucosidase activity

Details: 
Catalysis of the hydrolysis of glucosyl compounds, substances containing a group derived from a cyclic form of glucose or a glucose derivative.
GO Category: 
MF

GO:0015927

trehalase activity

Details: 
Catalysis of the hydrolysis of trehalose or a trehalose derivative.
GO Category: 
MF

GO:0015928

fucosidase activity

Details: 
Catalysis of the hydrolysis of fucosyl compounds, substances containing a group derived from a cyclic form of fucose or a fucose derivative.
GO Category: 
MF

GO:0015929

hexosaminidase activity

Details: 
Catalysis of the cleavage of hexosamine or N-acetylhexosamine residues (e.g. N-acetylglucosamine) residues from gangliosides or other glycoside oligosaccharides.
GO Category: 
MF

GO:0016160

amylase activity

Details: 
Catalysis of the hydrolysis of amylose or an amylose derivative.
GO Category: 
MF

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