31006 RaiAThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
31006	chr_1	RaiA	1937508	1938606	-	RaiA

Synonyms

NCBI ID	Ensembl Genomes exon ID
7446790	Thaps31006.3, Thaps31006.1, Thaps31006.2, Thaps31006.4

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0028

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0160	0.28	0.29 0.56

Most Highly Correlated Transcripts

9795 hypothetical protein 0.937	bd1893 (bd1893) NA 0.9303	270338 hypothetical protein 0.9299	bd718 (bd718) PRK10387 0.9285	bd1306 (bd1306) NA 0.9199	40193 NA 0.9194
8701 hypothetical protein 0.9144	35816 (GAPD2) PRK08955 0.9137	bd1645 (bd1645) tpt 0.913	35409 plant_peroxidase_like superfamily 0.9102

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RaiA		RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and...	cl00250	99.5116	1.13E-26	41 - 136	specific	238308
RaiA superfamily		RaiA ("ribosome-associated inhibitor A", also known as Protein Y (PY), YfiA, and...	-	99.5116	1.13E-26	41 - 136	superfamily	260300

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_16962	PHATRDRAFT_16962	217820	210509	439209	Cre05.g237450.t1.2	AT5G24490.1	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

Add comment

Log in to post comments