31085 Aa_trans superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31085 chr_1 Aa_trans superfamily 917811 919332 + Aa_trans superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7445632 Thaps31085.1, Thaps31085.4, Thaps31085.3, Thaps31085.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0391

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0060
 0.47

Most Highly Correlated Transcripts

23510

hypothetical protein
0.8577

12594

hypothetical protein
0.8573

25381

hypothetical protein
0.8249

21683

plant_peroxidase_like
0.822

5622

hypothetical protein
0.8216

6635

hypothetical protein
0.8199

23861

hypothetical protein
0.8147

9569

hypothetical protein
0.8092

25357

hypothetical protein
0.8038

7334

hypothetical protein
0.7999

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Aa_trans superfamily Transmembrane amino acid transporter protein; This transmembrane region is found in many amino acid... - 166.319 1.03E-46 16 - 413 superfamily 266708
SdaC Amino acid permeases [Amino acid transport and metabolism] - 140.864 1.88E-37 14 - 379 multi-dom 223884

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available 70520 Cre02.g145750.t1.1 AT1G80510.1 565997

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005279 GO:0006865 GO:0016020 -

GO:0005279

NA

Details: 
NA
GO Category: 
NA

GO:0006865

amino acid transport

Details: 
The directed movement of amino acids, organic acids containing one or more amino substituents, into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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