31516 SIK1
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31516 chr_1 SIK1 2521150 2522956 - SIK1

Synonyms

NCBI ID Ensembl Genomes exon ID
7449083 Thaps31516.1, Thaps31516.3, Thaps31516.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0190
 0.26

Most Highly Correlated Transcripts

23336

SRP40_C superfamily
0.9433

26678

(TKT1) PLN02790
0.9236

25434

PRK00142
0.9126

29018

NMD3
0.911

22499

TrmA
0.9106

26492

PRK05385
0.9105

24429

PRMT5 superfamily
0.91

268130

hypothetical protein
0.9087

2157

D123 superfamily
0.908

5532

hypothetical protein
0.905

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Nop superfamily Putative snoRNA binding domain; This family consists of various Pre RNA processing... - 229.866 1.28E-72 294 - 442 superfamily 250875
Nop superfamily Putative snoRNA binding domain; This family consists of various Pre RNA processing... - 229.866 1.28E-72 294 - 442 superfamily 250875
NOSIC NOSIC (NUC001) domain; This is the central domain in Nop56/SIK1-like proteins. cl06890 100.663 5.31E-26 181 - 232 specific 254604
NOSIC superfamily NOSIC (NUC001) domain; This is the central domain in Nop56/SIK1-like proteins. - 100.663 5.31E-26 181 - 232 superfamily 263088
NOP5NT superfamily NOP5NT (NUC127) domain; This N terminal domain is found in RNA-binding proteins of the NOP5 family. - 72.5923 7.18E-16 7 - 72 superfamily 254636
NOP5NT superfamily NOP5NT (NUC127) domain; This N terminal domain is found in RNA-binding proteins of the NOP5 family. - 72.5923 7.18E-16 7 - 72 superfamily 254636
SIK1 Protein implicated in ribosomal biogenesis, Nop56p homolog [Translation, ribosomal structure and... - 354.398 3.79E-117 49 - 447 multi-dom 224415

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_18579 PHATR_18579 277435 187347 434886 Cre12.g525200.t1.2 AT1G56110.1 482921

KEGG

KEGG description KEGG Pathway
Ribosome biogenesis in eukaryotes map03008

GO Terms

Not available -

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