31627 RluA
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31627 chr_1 RluA 709527 711037 + RluA

Synonyms

NCBI ID Ensembl Genomes exon ID
7453443 Thaps31627.2, Thaps31627.3, Thaps31627.4, Thaps31627.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0292

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0091
 0.31

Most Highly Correlated Transcripts

269034

hypothetical protein
0.9126

25365

hypothetical protein
0.8935

32668

CRCB
0.8893

4108

hypothetical protein
0.8862

4940

MiaA superfamily
0.8839

20859

SIR2 superfamily
0.8809

31819

DUF2419 superfamily
0.8778

262512

hypothetical protein
0.8769

37705

DUF4110
0.8762

35584

AANH_like superfamily
0.8737

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PseudoU_synth_RluCD_like Pseudouridine synthase, RsuA/RluD family; This group is comprised of eukaryotic, bacterial and... cl00130 161.351 5.45E-49 30 - 229 specific 211346
PseudoU_synth superfamily Pseudouridine synthases catalyze the isomerization of specific uridines in an RNA molecule to... - 161.351 5.45E-49 30 - 229 superfamily 260207
RluA Pseudouridylate synthases, 23S RNA-specific [Translation, ribosomal structure and biogenesis] - 182.125 1.02E-55 15 - 243 multi-dom 223638

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_13294 PHATR_13294 Not available Not available 62607 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0006396 GO:0009982 GO:0004730 GO:0016439 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0006396

RNA processing

Details: 
Any process involved in the conversion of one or more primary RNA transcripts into one or more mature RNA molecules.
GO Category: 
BP

GO:0009982

pseudouridine synthase activity

Details: 
Catalysis of the reaction: RNA uridine = RNA pseudouridine. Conversion of uridine in an RNA molecule to pseudouridine by rotation of the C1'-N-1 glycosidic bond of uridine in RNA to a C1'-C5.
GO Category: 
MF

GO:0004730

pseudouridylate synthase activity

Details: 
Catalysis of the reaction: D-ribose 5-phosphate + uracil = H(2)O + pseudouridine 5'-phosphate.
GO Category: 
MF

GO:0016439

NA

Details: 
NA
GO Category: 
NA

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