4940 MiaA superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4940 chr_4 MiaA superfamily 2340120 2342222 + MiaA superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7446706 Thaps4940.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0292

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0196
 0.36

Most Highly Correlated Transcripts

bd935

(bd935) TFIIS_I
0.8887

31627

RluA
0.8839

3858

PTZ00141
0.8768

269034

hypothetical protein
0.8752

bd1221

(bd1221) recQ_fam
0.8685

bd2028

(bd2028) NA
0.8685

31690

SpoVK
0.8636

5540

hypothetical protein
0.8605

31259

HA
0.8598

261719

AdoMet_MTases superfamily
0.8597

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
MiaA superfamily tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis] - 182.071 9.53E-52 166 - 602 superfamily 248193

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_43183 PHATRDRAFT_43183 179481 300558 Not available Cre17.g717350.t1.2 AT5G20040.2 Not available

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0004811 GO:0005524 GO:0008033 -

GO:0004811

NA

Details: 
NA
GO Category: 
NA

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

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