31859 Sm_B
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
31859 chr_2 Sm_B 2630403 2630843 + Sm_B

Synonyms

NCBI ID Ensembl Genomes exon ID
7452136 Thaps31859.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0426

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0041
 0.50

Most Highly Correlated Transcripts

10873

NA
0.8945

33699

TRX_family
0.8499

22118

Pkinase
0.8251

36223

CAP_ED
0.8247

264575

(Tp_HSF_2.6a) regulator [Rayko]
0.8176

269233

(Tp_HSF_3.4d) HSF_DNA-bind
0.8165

10772

hypothetical protein
0.8126

11314

hypothetical protein
0.8099

20421

RRM_CSTF2_RNA15_like
0.8096

32217

MA3
0.8021

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sm_B Sm protein B; The eukaryotic Sm proteins (B/B', D1, D2, D3, E, F and G) assemble into a... cl00259 132.29 1.76E-40 2 - 90 specific 212464
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 132.29 1.76E-40 2 - 90 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_35063 PHATRDRAFT_35063 215974 152083 121403 Cre14.g611150.t1.2 AT5G44500.2 304932

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0030529

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

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