32366 Pumilio
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32366 chr_2 Pumilio 139924 141966 - Pumilio

Synonyms

NCBI ID Ensembl Genomes exon ID
7442188 Thaps32366.1, Thaps32366.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0416

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0150
 0.38

Most Highly Correlated Transcripts

264005

Glyco_hydrolase_16 superfamily
0.9159

12899

AAA
0.9156

21284

CCT
0.9043

268581

hypothetical protein
0.8895

4350

hypothetical protein
0.888

268374

(PDHA1) TPP_E1_PDC_ADC_BCADC
0.8827

25111

HA
0.8798

13448

Sec1
0.8794

39741

(APM3) AP-3_Mu3_Cterm
0.8775

bd906

(bd906) NA
0.8756

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pumilio superfamily Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)... - 331.093 1.21E-107 309 - 631 superfamily 153420
Pumilio superfamily Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)... - 331.093 1.21E-107 309 - 631 superfamily 153420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_11337 PHATRDRAFT_11337 215511 178580 Not available Cre17.g746647.t1.1 AT3G20250.1 504992

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0016071 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0016071

mRNA metabolic process

Details: 
The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
GO Category: 
BP

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