32395 RNA_pol
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32395 chr_2 RNA_pol 1879043 1883149 + RNA_pol

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps32395.2, Thaps32395.1, Thaps32395.4, Thaps32395.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0230

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0193
 0.22

Most Highly Correlated Transcripts

21462

(rpoT) rpot-like RNA polymerase
0.9973

268812

HrpA
0.9639

39540

Alpha_ANH_like_II
0.9607

268735

(GPB1) WD40
0.9584

262041

MIF4G
0.9556

35207

YihA_EngB
0.9447

263641

InfB
0.944

21222

SrmB
0.9428

36434

DUF1253
0.9417

20742

hypothetical protein
0.9394

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RNA_pol superfamily DNA-dependent RNA polymerase; This is a family of single chain RNA polymerases. - 524.105 4.90E-174 882 - 1292 superfamily 250244
RNA_pol superfamily DNA-dependent RNA polymerase; This is a family of single chain RNA polymerases. - 524.105 4.90E-174 882 - 1292 superfamily 250244
RPOL_N superfamily DNA-directed RNA polymerase N-terminal; This is the N-terminal domain of DNA-directed RNA... - 195.218 4.49E-55 345 - 759 superfamily 258838
RPOL_N superfamily DNA-directed RNA polymerase N-terminal; This is the N-terminal domain of DNA-directed RNA... - 195.218 4.49E-55 345 - 759 superfamily 258838

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15863 PHATRDRAFT_15863 191644 236306 42597 Cre02.g075600.t1.1 AT2G24120.1 354222

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003677 GO:0003899 GO:0006350 GO:0003900 GO:0003901 GO:0003902 -

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

GO:0003899

DNA-directed RNA polymerase activity

Details: 
Catalysis of the reaction: nucleoside triphosphate + RNA(n) = diphosphate + RNA(n+1). Utilizes a DNA template, i.e. the catalysis of DNA-template-directed extension of the 3'-end of an RNA strand by one nucleotide at a time. Can initiate a chain 'de novo'.
GO Category: 
MF

GO:0006350

NA

Details: 
NA
GO Category: 
NA

GO:0003900

NA

Details: 
NA
GO Category: 
NA

GO:0003901

NA

Details: 
NA
GO Category: 
NA

GO:0003902

NA

Details: 
NA
GO Category: 
NA

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