32964 PLN00090
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
32964 chr_3 PLN00090 1550739 1551386 - PLN00090

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps32964.1, Thaps32964.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0024

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0246
 0.41

Most Highly Correlated Transcripts

bd218

(bd218) Chloroa_b-bind superfamily
0.9932

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9651

bd1820

(bd1820) Fasciclin
0.9623

bd1765

(bd1765) NA
0.9573

31749

Chloroa_b-bind superfamily
0.954

bd672

(bd672) NA
0.9534

270242

(PsbM) photosystem II reaction center M protein, plastid precursor
0.9526

2845

Chloroa_b-bind superfamily
0.9522

ThpsCt017

(trnG(ucc))
0.9448

33018

(Lhcf6) PLN00120
0.9442

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
PLN00090 photosystem II reaction center M protein; Provisional cl11459 167.595 2.51E-54 1 - 111 specific 165663
PsbM superfamily Photosystem II reaction centre M protein (PsbM); This family consists of several Photosystem II... - 167.595 2.51E-54 1 - 111 superfamily 264379

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_55057 PHATRDRAFT_55057 172395 6834 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009523 GO:0016021 GO:0019684 -

GO:0009523

photosystem II

Details: 
A photosystem that contains a pheophytin-quinone reaction center with associated accessory pigments and electron carriers. In cyanobacteria and chloroplasts, in the presence of light, PSII functions as a water-plastoquinone oxidoreductase, transferring electrons from water to plastoquinone, whereas other photosynthetic bacteria carry out anoxygenic photosynthesis and oxidize other compounds to re-reduce the photoreaction center.
GO Category: 
CC

GO:0016021

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

GO:0019684

photosynthesis, light reaction

Details: 
The light reactions of photosynthesis, which take place in photosystems II and I. Light energy is harvested and used to power the transfer of electrons among a series of electron donors and acceptors. The final electron acceptor is NADP+, which is reduced to NADPH. NADPH generated from light reactions is used in sugar synthesis in dark reactions. Light reactions also generate a proton motive force across the thylakoid membrane, and the proton gradient is used to synthesize ATP. There are two chemical reactions involved in the light reactions: water oxidation in photosystem II, and NADP reduction in photosystem I.
GO Category: 
BP

Add comment

Log in to post comments