33696 zf-CHYThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
33696	chr_4	zf-CHY	2078669	2080567	-	zf-CHY

Synonyms

NCBI ID	Ensembl Genomes exon ID
7451372	Thaps33696.2, Thaps33696.1, Thaps33696.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0466

Most Highly Correlated Transcripts

12899 AAA 0.9071	bd1765 (bd1765) NA 0.9068	bd218 (bd218) Chloroa_b-bind superfamily 0.9027	bd1160 (bd1160) Chloroa_b-bind superfamily 0.8992	12836 EEP superfamily 0.8907	bd1820 (bd1820) Fasciclin 0.8883
bd1387 (bd1387) psbE 0.8864	bd1949 (bd1949) NA 0.8756	6075 hypothetical protein 0.8746	bd1304 (bd1304) Ycf4 0.8675

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
zf-CHY		CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many...	cl19861	74.2783	2.27E-16	177 - 253	specific	253220
zf-CHY superfamily		CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many...	-	74.2783	2.27E-16	177 - 253	superfamily	268214

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_14699	PHATRDRAFT_14699	Not available	Not available	Not available	Not available	AT5G25560.1	Not available

KEGG

KEGG description	KEGG Pathway
Ubiquitin mediated proteolysis	map04120

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

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