34187 (ACAS2) PRK00174
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34187 chr_5 (ACAS2) PRK00174 1434157 1436404 - PRK00174

Synonyms

NCBI ID Ensembl Genomes exon ID
7453218 Thaps34187.4, Thaps34187.3, Thaps34187.1, Thaps34187.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0211

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0116
 0.38

Most Highly Correlated Transcripts

28334

(GAPD4) PTZ00023
0.9179

9947

hypothetical protein
0.9134

4976

Abhydrolase_6
0.9051

262575

DHOD_1A_like
0.9033

37974

Sugar_tr
0.9021

7506

Uba3_RUB
0.8991

25042

AFD_class_I superfamily
0.8969

4171

hypothetical protein
0.8953

11183

hypothetical protein
0.8939

8524

pntA
0.8936

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
AFD_class_I superfamily Adenylate forming domain, Class I; This family includes acyl- and aryl-CoA ligases, as well as the... - 967.781 0 28 - 652 superfamily 266508
PRK00174 acetyl-CoA synthetase; Provisional - 985.018 0 8 - 667 multi-dom 234677

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22974 PHATRDRAFT_22974 239808 262178 451133 Cre01.g071662.t1.1 AT5G36880.1 546262

KEGG

KEGG description KEGG Pathway
Biosynthesis of secondary metabolites map01110

GO Terms

GO:0003824 GO:0008152 GO:0003987 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0003987

acetate-CoA ligase activity

Details: 
Catalysis of the reaction: ATP + acetate + CoA = AMP + diphosphate + acetyl-CoA.
GO Category: 
MF

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