34447 Cyt-b5Thalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
34447	chr_5	Cyt-b5	1433193	1433926	-	Cyt-b5

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448136	Thaps34447.2, Thaps34447.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0017

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0185	0.25	0.001 2000

Most Highly Correlated Transcripts

bd1160 (bd1160) Chloroa_b-bind superfamily 0.9605	bd1306 (bd1306) NA 0.9591	bd218 (bd218) Chloroa_b-bind superfamily 0.9489	bd1820 (bd1820) Fasciclin 0.9448	bd1863 (bd1863) NA 0.9372	bd1403 (bd1403) NA 0.9352
bd1645 (bd1645) tpt 0.9262	bd208 (bd208) DUF3529 0.9211	11822 hypothetical protein 0.9169	bd1387 (bd1387) psbE 0.9161

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Cyt-b5		Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a...	cl02041	104.973	5.95E-30	10 - 88	specific	249651
Cyt-b5 superfamily		Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a...	-	104.973	5.95E-30	10 - 88	superfamily	261158

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_30770	PHATRDRAFT_30770	172305	250724	369948	Cre16.g659350.t1.2	AT1G26340.1	397414

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0009703 -

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