3459 Snf7 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3459	chr_3	Snf7 superfamily	1017256	1018033	-	Snf7 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7448757	Thaps3459.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0275

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0026	0.39

Most Highly Correlated Transcripts

269624 TIM_phosphate_binding superfamily 0.9103	40200 TRX_reduct 0.9045	268443 SAICAR_synt_Sc 0.902	268257 fabG 0.8733	35136 NA 0.8732	37118 FeThRed_B 0.8706
267979 HCO3_cotransp superfamily 0.8702	6028 NA 0.8649	13393 PLN02321 0.8615	16114 PLN02350 0.8592

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Snf7 superfamily		Snf7; This family of proteins are involved in protein sorting and transport from the endosome to...	-	66.8791	4.59E-14	58 - 199	superfamily	267743

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_49220	PHATRDRAFT_49220	268097	147917	Not available	Not available	Not available	315765

KEGG

KEGG description	KEGG Pathway
Endocytosis	map04144

GO Terms

GO:0005554 GO:0004252 GO:0004289 GO:0008132 GO:0008243 GO:0008991 GO:0016808 -

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