Thaps_bicluster_0026 Residual: 0.39
Thalassiosira pseudonana

Module Page Help

What is a module?

Regulatory units (modules) in the Network Portal are based on the network inference algorithm used. For the current version, modules are based on cMonkey modules and Inferelator regulatory influences on these modules. More specifically, module refers to set of genes that are conditionally co-regulated under subset of the conditions. Identification of modules integrates co-expression, de-novo motif identification, and other functional associations such as operon information and protein-protein interactions.

Expression Profiles

Expression profiles is a plot of the expression ratios (log10) of the module's genes, over all subset of the conditions included in the module. The X-axis represent conditions and the Y-axis represents log10 expression ratios. Each gene is plotted as line plot with different colors. Colored legend for the lines are presented under the plot. This plot is dynamic. Clicking on the gene names in the legend will show/hide the plot for that particular gene. A tooltip will show expression ratio information if you mouseover the lines in the plot.

Motif Locations

Location of the Identified motifs for the module in the upstream regions of the member genes are shown under the expression profiles plot. This plot shows the diagram of the upstream positions of the motifs, colored red and green for motifs #1, and 2, respectively. Intensity of the color is proportional to the significance of the occurence of that motif at a given location. Motifs on the forward and reverse strand are represented over and under the line respectively.

Regulators

For each module, single or AND logic connected regulatory influences are listed under the regulators tab. These regulatory influences are identified by Inferelator. Table shows name of the regulator and its type. tf: Transcription factor, ef: Environmental factor and combiner:Combinatorial influence of a tf or an ef through logic gate. Tabel is sortable by clicking on the arrows next to column headers.

Motifs

Transcription factor binding motifs help to elucidate regulatory mechanism. cMonkey integrates powerful de novo motif detection to identify conditionally co-regulated sets of genes. De novo predicted motifs for each module are listed in the module page as motif logo images along with associated prediction statistics (e-values). The main module page also shows the location of these motifs within the upstream sequences of the module member genes.
Title Residual Model version Organism
Thaps_bicluster_0026 0.39 Thalassiosira pseudonana
Displaying 1 - 64 of 64
10256 hypothetical protein

10256 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10256
10331 hypothetical protein

10331 - hypothetical protein

GO Terms:

GO:0001539, GO:0003774, GO:0006935, GO:0016020, GO:0005509, GO:0004339

CD Domains:

Go To Gene Page:

10331
10404 MscS

10404 - MscS

GO Terms:

GO:0016020

CD Domains:

Go To Gene Page:

10404
10712 hypothetical protein

10712 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10712
10714 hypothetical protein

10714 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10714
10718 hypothetical protein

10718 - hypothetical protein

GO Terms:

GO:0004420, GO:0009058

CD Domains:

Go To Gene Page:

10718
10762 hypothetical protein

10762 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

10762
10806 (Tp_HSF_2.4b) HSF_DNA-bind superfamily

10806 - (Tp_HSF_2.4b) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

10806
11004 hypothetical protein

11004 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11004
11162 Methyltransf_21 superfamily

11162 - Methyltransf_21 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

11162
11795 (Tp_CCCH23) regulator [Rayko]

11795 - (Tp_CCCH23) regulator [Rayko]

GO Terms:

GO:0003676

CD Domains:

Go To Gene Page:

11795
11963 GH18_chitinase-like superfamily

11963 - GH18_chitinase-like superfamily

GO Terms:

GO:0008152, GO:0016787, GO:0005576, GO:0006030, GO:0008061, GO:0004308

CD Domains:

Go To Gene Page:

11963
11981 hypothetical protein

11981 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

11981
12185 hypothetical protein

12185 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

12185
12758 PLN00113

12758 - PLN00113

GO Terms:

NA

CD Domains:

Go To Gene Page:

12758
16912 IMPase

16912 - IMPase

GO Terms:

GO:0004437, GO:0008934

CD Domains:

Go To Gene Page:

16912
1915 hypothetical protein

1915 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

1915
2055 hypothetical protein

2055 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2055
21589 GluZincin superfamily

21589 - GluZincin superfamily

GO Terms:

GO:0008152, GO:0008810

CD Domains:

Go To Gene Page:

21589
21796 hypothetical protein

21796 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21796
21898 hypothetical protein

21898 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

21898
22121 hypothetical protein

22121 - hypothetical protein

GO Terms:

GO:0000287, GO:0008152, GO:0016462

CD Domains:

Go To Gene Page:

22121
23801 (Tp_HSF_4c) HSF_DNA-bind superfamily

23801 - (Tp_HSF_4c) HSF_DNA-bind superfamily

GO Terms:

GO:0003700, GO:0005634, GO:0006355, GO:0003677

CD Domains:

Go To Gene Page:

23801
25026 hypothetical protein

25026 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25026
25193 hypothetical protein

25193 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

25193
25613 PI3Kc_like superfamily

25613 - PI3Kc_like superfamily

GO Terms:

GO:0016773, GO:0008318, GO:0018346, GO:0005351, GO:0009401, GO:0004672, GO:0004682, GO:0004691, GO:0005952, GO:0005956, GO:0008603, GO:0008605

CD Domains:

Go To Gene Page:

25613
261804

261804 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

261804
261967 (Tp_Hox7) regulator [Rayko]

261967 - (Tp_Hox7) regulator [Rayko]

GO Terms:

GO:0003677, GO:0003700, GO:0005634, GO:0006355

CD Domains:

Go To Gene Page:

261967
262000 hypothetical protein

262000 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

262000
262683

262683 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

262683
263324

263324 -

GO Terms:

NA

CD Domains:

Go To Gene Page:

263324
264184 PLN00049

264184 - PLN00049

GO Terms:

GO:0005515, GO:0006508, GO:0008236, GO:0019132

CD Domains:

Go To Gene Page:

264184
264690 (lipB_1) BPL_LplA_LipB superfamily

264690 - (lipB_1) BPL_LplA_LipB superfamily

GO Terms:

GO:0009107, GO:0003824, GO:0006464, GO:0000074, GO:0005634

CD Domains:

Go To Gene Page:

264690
268447 hypothetical protein

268447 - hypothetical protein

GO Terms:

GO:0005489, GO:0006118

CD Domains:

Go To Gene Page:

268447
268546 (PPC1) PEPcase superfamily

268546 - (PPC1) PEPcase superfamily

GO Terms:

GO:0006099, GO:0008964

CD Domains:

Go To Gene Page:

268546
268564 Peptidase_C1 superfamily

268564 - Peptidase_C1 superfamily

GO Terms:

GO:0004197, GO:0006508, GO:0008234

CD Domains:

Go To Gene Page:

268564
268987 Glyco_hydro_10 superfamily

268987 - Glyco_hydro_10 superfamily

GO Terms:

GO:0004553, GO:0005975, GO:0003677, GO:0006306, GO:0008170

CD Domains:

Go To Gene Page:

268987
27850 (PGAM2) HP_PGM_like

27850 - (PGAM2) HP_PGM_like

GO Terms:

GO:0003824, GO:0008152, GO:0006096, GO:0016868, GO:0004619, GO:0046537, GO:0046538

CD Domains:

Go To Gene Page:

27850
2990 hypothetical protein

2990 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

2990
3047 EEP superfamily

3047 - EEP superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

3047
32211 G10

32211 - G10

GO Terms:

GO:0005554, GO:0005634

CD Domains:

Go To Gene Page:

32211
3238 ANK

3238 - ANK

GO Terms:

NA

CD Domains:

Go To Gene Page:

3238
3459 Snf7 superfamily

3459 - Snf7 superfamily

GO Terms:

GO:0005554, GO:0004252, GO:0004289, GO:0008132, GO:0008243, GO:0008991, GO:0016808

CD Domains:

Go To Gene Page:

3459
35711 GH16_laminarinase_like

35711 - GH16_laminarinase_like

GO Terms:

GO:0004553, GO:0005975

CD Domains:

Go To Gene Page:

35711
38987 ATM1

38987 - ATM1

GO Terms:

GO:0005524, GO:0006810, GO:0016021, GO:0042626, GO:0016887, GO:0000166, GO:0017111

CD Domains:

Go To Gene Page:

38987
3975 hypothetical protein

3975 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

3975
4048 hypothetical protein

4048 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4048
4199 ApbA

4199 - ApbA

GO Terms:

NA

CD Domains:

Go To Gene Page:

4199
4223 DDE_Tnp_1_7 superfamily

4223 - DDE_Tnp_1_7 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

4223
4907 hypothetical protein

4907 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

4907
5377 hypothetical protein

5377 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5377
5809 hypothetical protein

5809 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

5809
6211 hypothetical protein

6211 - hypothetical protein

GO Terms:

GO:0000074, GO:0005634

CD Domains:

Go To Gene Page:

6211
6684 Tryp_SPc

6684 - Tryp_SPc

GO Terms:

GO:0004295, GO:0006508, GO:0004263, GO:0004252, GO:0004289, GO:0008132, GO:0008243, GO:0008991, GO:0016808

CD Domains:

Go To Gene Page:

6684
728 (ELO3) ELO

728 - (ELO3) ELO

GO Terms:

GO:0016021

CD Domains:

Go To Gene Page:

728
7513 hypothetical protein

7513 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7513
771 DUF647 superfamily

771 - DUF647 superfamily

GO Terms:

NA

CD Domains:

Go To Gene Page:

771
7844 hypothetical protein

7844 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

7844
8149 AarF

8149 - AarF

GO Terms:

GO:0008654

CD Domains:

Go To Gene Page:

8149
8234 hypothetical protein

8234 - hypothetical protein

GO Terms:

GO:0008152, GO:0016491

CD Domains:

Go To Gene Page:

8234
8450 DnaJ

8450 - DnaJ

GO Terms:

GO:0006457, GO:0031072, GO:0051082

CD Domains:

Go To Gene Page:

8450
8614 hypothetical protein

8614 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

8614
869 hypothetical protein

869 - hypothetical protein

GO Terms:

NA

CD Domains:

Go To Gene Page:

869
918 (Tp_HSF_2.5b) regulator [Rayko]

918 - (Tp_HSF_2.5b) regulator [Rayko]

GO Terms:

NA

CD Domains:

Go To Gene Page:

918
GO ID Go Term p-value q-value Cluster
GO:0006935 chemotaxis 0.00620219 1 Thaps_bicluster_0026
GO:0001539 ciliary or flagellar motility 0.0245865 1 Thaps_bicluster_0026
GO:0009107 lipoate biosynthesis 0.0245865 1 Thaps_bicluster_0026
GO:0018346 protein amino acid prenylation 0.0306412 1 Thaps_bicluster_0026
GO:0000074 regulation of cell cycle 0.0527164 1 Thaps_bicluster_0026
GO:0006099 tricarboxylic acid cycle 0.0603738 1 Thaps_bicluster_0026
GO:0005975 carbohydrate metabolism 0.0780933 1 Thaps_bicluster_0026
GO:0008654 phospholipid biosynthesis 0.0835234 1 Thaps_bicluster_0026
GO:0008152 metabolism 0.102461 1 Thaps_bicluster_0026
GO:0009401 phosphoenolpyruvate-dependent sugar phosphotransferase system 0.106121 1 Thaps_bicluster_0026
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