3461 PRK00927
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3461 chr_3 PRK00927 1024287 1026414 + PRK00927

Synonyms

NCBI ID Ensembl Genomes exon ID
7448758 Thaps3461.2, Thaps3461.1, Thaps3461.5, Thaps3461.4, Thaps3461.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0048

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0094
 0.37

Most Highly Correlated Transcripts

262977

NA
0.9262

bd208

(bd208) DUF3529
0.9225

4604

hypothetical protein
0.9138

13393

PLN02321
0.9097

bd258

(bd258) HU
0.9086

261400

NA
0.9081

38964

Chorismate_synthase
0.9052

bd1765

(bd1765) NA
0.9019

25960

PLN02853
0.9016

9511

adk
0.9001

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
TrpRS_core catalytic core domain of tryptophanyl-tRNA synthetase; Tryptophanyl-tRNA synthetase (TrpRS)... cl00015 352.271 4.38E-121 5 - 274 specific 173903
nt_trans superfamily nucleotidyl transferase superfamily; nt_trans (nucleotidyl transferase) This superfamily includes... - 352.271 4.38E-121 5 - 274 superfamily 260139
PRK00927 tryptophanyl-tRNA synthetase; Reviewed - 498.074 1.29E-177 5 - 320 multi-dom 234866

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15595 PHATRDRAFT_15595 211404 297628 426613 Cre05.g238322.t1.1 AT2G25840.1 491535

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004812 GO:0005524 GO:0006418 GO:0004830 GO:0006436 -

GO:0004812

aminoacyl-tRNA ligase activity

Details: 
Catalysis of the formation of aminoacyl-tRNA from ATP, amino acid, and tRNA with the release of diphosphate and AMP.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006418

tRNA aminoacylation for protein translation

Details: 
The synthesis of aminoacyl tRNA by the formation of an ester bond between the 3'-hydroxyl group of the most 3' adenosine of the tRNA, to be used in ribosome-mediated polypeptide synthesis.
GO Category: 
BP

GO:0004830

tryptophan-tRNA ligase activity

Details: 
Catalysis of the reaction: ATP + L-tryptophan + tRNA(Trp) = AMP + diphosphate + L-tryptophanyl-tRNA(Trp).
GO Category: 
MF

GO:0006436

tryptophanyl-tRNA aminoacylation

Details: 
The process of coupling tryptophan to tryptophanyl-tRNA, catalyzed by tryptophanyl-tRNA synthetase. In tRNA aminoacylation, the amino acid is first activated by linkage to AMP and then transferred to either the 2'- or the 3'-hydroxyl group of the 3'-adenosine residue of the tRNA.
GO Category: 
BP

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