34672 Sm_E
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
34672 chr_6 Sm_E 716303 716927 - Sm_E

Synonyms

NCBI ID Ensembl Genomes exon ID
7443592 Thaps34672.1, Thaps34672.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0429

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0145
 0.29

Most Highly Correlated Transcripts

269624

TIM_phosphate_binding superfamily
0.8977

37118

FeThRed_B
0.8878

37497

cysE
0.8865

16114

PLN02350
0.885

41655

Chloroa_b-bind
0.8848

37934

GRX_PICOT_like
0.8771

13448

Sec1
0.8743

261400

NA
0.8652

40200

TRX_reduct
0.8634

9203

hypothetical protein
0.8631

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Sm_E Sm protein E; The eukaryotic Sm proteins (B/B', D1, D2, D3, E, F and G) assemble into a... cl00259 146.93 2.67E-46 60 - 138 specific 212465
Sm_like superfamily Sm and related proteins; The eukaryotic Sm and Sm-like (LSm) proteins associate with RNA to form... - 146.93 2.67E-46 60 - 138 superfamily 260307

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
2846 PHATRDRAFT_15709 PHATRDRAFT_15709 200499 249751 74860 Cre08.g385200.t1.1 AT4G30330.1 486753

KEGG

KEGG description KEGG Pathway
Spliceosome map03040

GO Terms

GO:0005634 GO:0005732 GO:0006397 GO:0030529 -

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0005732

small nucleolar ribonucleoprotein complex

Details: 
A ribonucleoprotein complex that contains an RNA molecule of the small nucleolar RNA (snoRNA) family and associated proteins. Most are involved in a step of processing of rRNA: cleavage, 2'-O-methylation, or pseudouridylation. The majority, though not all, fall into one of two classes, box C/D type or box H/ACA type.
GO Category: 
CC

GO:0006397

mRNA processing

Details: 
Any process involved in the conversion of a primary mRNA transcript into one or more mature mRNA(s) prior to translation into polypeptide.
GO Category: 
BP

GO:0030529

ribonucleoprotein complex

Details: 
A macromolecular complex containing both protein and RNA molecules.
GO Category: 
CC

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