35049 PRK07411
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35049 chr_6 PRK07411 1465537 1467004 - PRK07411

Synonyms

NCBI ID Ensembl Genomes exon ID
7442741 Thaps35049.2, Thaps35049.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0239

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0279
 0.39

Most Highly Correlated Transcripts

36007

Aldolase_II superfamily
0.9191

268443

SAICAR_synt_Sc
0.9133

35136

NA
0.9024

262555

AAT_I superfamily
0.8996

5105

hypothetical protein
0.8928

4524

DHQS
0.8909

8157

hypothetical protein
0.8898

9705

DUF2431 superfamily
0.8848

40200

TRX_reduct
0.8837

267979

HCO3_cotransp superfamily
0.8794

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis... cl17196 321.349 9.25E-108 86 - 322 specific 238386
E1_enzyme_family superfamily Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes... - 321.349 9.25E-108 86 - 322 superfamily 266547
PRK07411 hypothetical protein; Validated - 363.286 8.93E-122 74 - 457 multi-dom 180967

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_20318 PHATRDRAFT_20318 275015 243914 68584 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0004842 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

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