35360 Autophagy_N
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
35360 chr_7 Autophagy_N 1218857 1219918 + Autophagy_N

Synonyms

NCBI ID Ensembl Genomes exon ID
7447096 Thaps35360.2, Thaps35360.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0401

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0161
 0.36

Most Highly Correlated Transcripts

3702

hypothetical protein
0.9141

4482

hypothetical protein
0.9134

4565

hypothetical protein
0.9079

32139

hypothetical protein
0.9067

6087

hypothetical protein
0.9038

3310

hypothetical protein
0.8995

5913

(Tp_bZIP10) regulator [Rayko]
0.8976

9174

DUF563
0.8963

39767

TLP_HIUase
0.8962

10479

hypothetical protein
0.8961

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Autophagy_N superfamily Autophagocytosis associated protein (Atg3), N-terminal domain; Autophagocytosis is a starvation-... - 153.655 1.96E-45 3 - 158 superfamily 252296
Autophagy_N superfamily Autophagocytosis associated protein (Atg3), N-terminal domain; Autophagocytosis is a starvation-... - 153.655 1.96E-45 3 - 158 superfamily 252296
Autophagy_act_C superfamily Autophagocytosis associated protein, active-site domain; Autophagocytosis is a starvation-induced... - 98.4468 6.33E-26 206 - 269 superfamily 202841
Autophagy_act_C superfamily Autophagocytosis associated protein, active-site domain; Autophagocytosis is a starvation-induced... - 98.4468 6.33E-26 206 - 269 superfamily 202841

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_41667 PHATRDRAFT_41667 264374 326924 420280 Cre02.g102350.t1.2 AT5G61500.1 317232

KEGG

KEGG description KEGG Pathway
Regulation of autophagy map04140

GO Terms

Not available -

Add comment

Log in to post comments