36592 HMGB-UBF_HMG-box
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
36592 chr_11a HMGB-UBF_HMG-box 547405 547804 - HMGB-UBF_HMG-box
NCBI ID Ensembl Genomes exon ID
7443323 Thaps36592.1
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0175
Normalized Mean Residue
Thaps_bicluster_0238
0.33
(bd1893) NA
0.9379
RimL
0.9343
ATP-synt_D
0.9159
AP-4_Mu4_Cterm
0.9138
FBPase
0.9073
(ARF3) Arf1_5_like
0.9038
(bd758) NA
0.9032
cyclophilin superfamily
0.9027
(DGD2) UGD_SDR_e
0.9024
(bd463) Aa_trans superfamily
0.9013
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HMGB-UBF_HMG-box HMGB-UBF_HMG-box, class II and III members of the HMG-box superfamily of DNA-binding proteins.... cl00082 66.8825 1.20E-15 62 - 127 specific 238686
HMG-box superfamily High Mobility Group (HMG)-box is found in a variety of eukaryotic chromosomal proteins and... - 66.8825 1.20E-15 62 - 127 superfamily 260179
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0000785 GO:0003677 GO:0005634 GO:0006355 -

chromatin

Details: 
The ordered and organized complex of DNA, protein, and sometimes RNA, that forms the chromosome.
GO Category: 
CC

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP
Log in to post comments