36928 Lin0512_fam superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
36928	chr_12	Lin0512_fam superfamily	573079	573687	+	Lin0512_fam superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445838	Thaps36928.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0007

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0123	0.31	0.14 1300

Most Highly Correlated Transcripts

37934 GRX_PICOT_like 0.9196	26991 GRX_GRXh_1_2_like 0.9055	25662 hypothetical protein 0.9035	33024 cysteine_hydrolases superfamily 0.8965	9412 hypothetical protein 0.8961	2462 hypothetical protein 0.8911
1807 hypothetical protein 0.8874	8827 hypothetical protein 0.886	31751 PKCI_related 0.8858	6173 hypothetical protein 0.8857

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
Lin0512_fam superfamily		Conserved hypothetical protein (Lin0512_fam); This family consists of few members, broadly...	-	119.896	2.02E-34	94 - 201	superfamily	142268

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_40315	PHATRDRAFT_40315	270147	201855	98147	Not available	AT1G29040.4	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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