37197 Pumilio superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37197 chr_13 Pumilio superfamily 9368 11260 - Pumilio superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7448045 Thaps37197.1, Thaps37197.3, Thaps37197.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0464

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0211
 0.43

Most Highly Correlated Transcripts

23391

(DES11) Delta6-FADS-like
0.7909

8274

hypothetical protein
0.7717

7796

ANK
0.7704

2010

hypothetical protein
0.7592

bd622

(bd622) NA
0.7512

4066

hypothetical protein
0.7491

4095

hypothetical protein
0.7406

bd1095

(bd1095) NA
0.7365

25878

PRK07206
0.728

5119

MATE_like superfamily
0.7215

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Pumilio superfamily Pumilio-family RNA binding domain; Puf repeats (also labelled PUM-HD or Pumilio homology domain)... - 251.742 3.19E-78 229 - 553 superfamily 153420

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003723 GO:0016071 -

GO:0003723

RNA binding

Details: 
Interacting selectively and non-covalently with an RNA molecule or a portion thereof.
GO Category: 
MF

GO:0016071

mRNA metabolic process

Details: 
The chemical reactions and pathways involving mRNA, messenger RNA, which is responsible for carrying the coded genetic 'message', transcribed from DNA, to sites of protein assembly at the ribosomes.
GO Category: 
BP

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