37327 tRNA_Me_trans
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
37327 chr_14 tRNA_Me_trans 770402 772525 - tRNA_Me_trans

Synonyms

NCBI ID Ensembl Genomes exon ID
7452732 Thaps37327.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0221

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0110
 0.24

Most Highly Correlated Transcripts

268688

hypothetical protein
0.9577

22672

hypothetical protein
0.948

21397

Nop52 superfamily
0.941

bd1876

(bd1876) NatB_MDM20 superfamily
0.9333

24907

Sas10
0.929

34006

Sun
0.9281

bd190

(bd190) SrmB
0.9253

42282

HA2
0.9249

39022

COG2319
0.9241

34413

RRM_ABT1_like
0.9234

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
tRNA_Me_trans tRNA methyl transferase. This family represents tRNA(5-methylaminomethyl-2-thiouridine)-... cl00292 418.849 1.16E-140 308 - 685 specific 238956
AANH_like superfamily Adenine nucleotide alpha hydrolases superfamily including N type ATP PPases, ATP sulphurylases... - 418.849 1.16E-140 308 - 685 superfamily 260331
tRNA_Me_trans tRNA methyl transferase; This family represents tRNA(5-methylaminomethyl-2-thiouridine)-... - 425.893 2.78E-143 308 - 685 multi-dom 251696

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15294 PHATRDRAFT_15294 192194 258802 70246 Cre14.g628000.t1.2 AT1G51310.1 Not available

KEGG

KEGG description KEGG Pathway
Sulfur relay system map04122

GO Terms

GO:0004808 GO:0005737 GO:0008033 -

GO:0004808

tRNA (5-methylaminomethyl-2-thiouridylate)-methyltransferase activity

Details: 
Catalysis of the reaction: S-adenosyl-L-methionine + tRNA containing 5-aminomethyl-2-thiouridine = S-adenosyl-L-homocysteine + tRNA containing 5-methylaminomethyl-2-thiouridylate.
GO Category: 
MF

GO:0005737

cytoplasm

Details: 
All of the contents of a cell excluding the plasma membrane and nucleus, but including other subcellular structures.
GO Category: 
CC

GO:0008033

tRNA processing

Details: 
The process in which a pre-tRNA molecule is converted to a mature tRNA, ready for addition of an aminoacyl group.
GO Category: 
BP

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