37638 HrpA
Thalassiosira pseudonana

Chromosome Product Transcript Start End Strand Short Name
37638 chr_15 HrpA 490274 494105 - HrpA
Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0474
(Tp_Myb2R7) MYB DNA binding protein/ transcription factor-like protein
0.9467
SNF2_N
0.9456
hypothetical protein
0.9437
MA3
0.9418
Syja_N
0.9415
hypothetical protein
0.9388
GH18_chitinase-like superfamily
0.9373
MYSc
0.9357
hypothetical protein
0.9331
(HSF43) HSF_DNA-bind superfamily
0.931
Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... cl17251 97.7931 2.42E-23 373 - 522 specific 238005
DEXDc superfamily DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA... - 97.7931 2.42E-23 373 - 522 superfamily 266587
HA2 Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... cl04503 78.0279 5.20E-17 823 - 905 specific 252575
HA2 superfamily Helicase associated domain (HA2); This presumed domain is about 90 amino acid residues in length.... - 78.0279 5.20E-17 823 - 905 superfamily 262181
HrpA HrpA-like helicases [DNA replication, recombination, and repair] - 410.558 1.57E-128 310 - 916 multi-dom 224557
T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available 196780 180017 Not available Not available Not available Not available
KEGG description KEGG Pathway
Not available Not available
GO:0001584 GO:0007186 GO:0016021 GO:0005524 GO:0008026 GO:0003676 GO:0004386 GO:0004003 GO:0004004 GO:0008094 GO:0008186 GO:0015462 GO:0015616 GO:0016887 GO:0017116 GO:0042623 GO:0042624 GO:0042625 GO:0042626 -

NA

Details: 
NA
GO Category: 
NA

G-protein coupled receptor signaling pathway

Details: 
A series of molecular signals that proceeds with an activated receptor promoting the exchange of GDP for GTP on the alpha-subunit of an associated heterotrimeric G-protein complex. The GTP-bound activated alpha-G-protein then dissociates from the beta- and gamma-subunits to further transmit the signal within the cell. The pathway begins with receptor-ligand interaction, or for basal GPCR signaling the pathway begins with the receptor activating its G protein in the absence of an agonist, and ends with regulation of a downstream cellular process, e.g. transcription.
GO Category: 
BP

integral component of membrane

Details: 
The component of a membrane consisting of gene products and protein complexes that have some part that penetrates at least one leaflet of the membrane bilayer. This component includes gene products that are buried in the bilayer with no exposure outside the bilayer.
GO Category: 
CC

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

ATP-dependent helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

helicase activity

Details: 
Catalysis of the reaction: NTP + H2O = NDP + phosphate, to drive the unwinding of a DNA or RNA helix.
GO Category: 
MF

ATP-dependent DNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of the DNA helix.
GO Category: 
MF

ATP-dependent RNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction drives the unwinding of an RNA helix.
GO Category: 
MF

DNA-dependent ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of single- or double-stranded DNA, and it drives another reaction.
GO Category: 
MF

RNA-dependent ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction requires the presence of RNA, and it drives another reaction.
GO Category: 
MF

protein-transmembrane transporting ATPase activity

Details: 
Catalysis of the transfer of a solute or solutes from one side of a membrane to the other according to the reaction: ATP + H2O + protein(out) = ADP + phosphate + protein(in).
GO Category: 
MF

DNA translocase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to drive movement along a single- or double-stranded DNA molecule.
GO Category: 
MF

ATPase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate + 2 H+. May or may not be coupled to another reaction.
GO Category: 
MF

single-stranded DNA-dependent ATP-dependent DNA helicase activity

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, in the presence of single-stranded DNA; drives the unwinding of a DNA helix.
GO Category: 
MF

ATPase activity, coupled

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction directly drives some other reaction, for example ion transport across a membrane.
GO Category: 
MF

ATPase activity, uncoupled

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate; this reaction is not directly coupled to any other reaction.
GO Category: 
MF

ATPase activity, coupled to transmembrane movement of ions

Details: 
Catalysis of the transfer of an ion from one side of a membrane to the other, driven by the reaction: ATP + H2O = ADP + phosphate.
GO Category: 
MF

ATPase activity, coupled to transmembrane movement of substances

Details: 
Catalysis of the reaction: ATP + H2O = ADP + phosphate, to directly drive the active transport of a substance across a membrane.
GO Category: 
MF
Log in to post comments