3928 KDSR-like_SDR_c
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
3928 chr_3 KDSR-like_SDR_c 2160559 2162097 + KDSR-like_SDR_c

Synonyms

NCBI ID Ensembl Genomes exon ID
7452106 Thaps3928.1, Thaps3928.2, Thaps3928.3

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0087

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0176
 0.34

Most Highly Correlated Transcripts

2085

hypothetical protein
0.8933

bd1095

(bd1095) NA
0.8899

bd1094

(bd1094) FH2 superfamily
0.8758

34379

NIF
0.8707

262526

MCM
0.8668

bd529

(bd529) SNF2_N
0.8656

bd719

(bd719) NA
0.8652

263868

KISc
0.8612

21233

hypothetical protein
0.8606

1224

MFS transporter
0.8599

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
KDSR-like_SDR_c 3-ketodihydrosphingosine reductase (KDSR) and related proteins, classical (c) SDR; These proteins... cl09931 237.536 1.47E-75 81 - 345 specific 187643
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 237.536 1.47E-75 81 - 345 superfamily 263925
adh_short short chain dehydrogenase; This family contains a wide variety of dehydrogenases. - 109.949 1.27E-28 82 - 291 multi-dom 249592

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_48977 PHATRDRAFT_48977 199849 299118 419354 Cre17.g702750.t1.2 AT3G06060.1 553530

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0008152 GO:0016491 GO:0047560 -

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0047560

3-dehydrosphinganine reductase activity

Details: 
Catalysis of the reaction: NADP(+) + sphinganine = 3-dehydrosphinganine + H(+) + NADPH.
GO Category: 
MF

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