3949 CCL1Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
3949	chr_3	CCL1	2209672	2210766	+	CCL1

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443802	Thaps3949.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0463

Most Highly Correlated Transcripts

24243 hypothetical protein 0.8589	5790 hypothetical protein 0.841	20919 hypothetical protein 0.8337	5604 hypothetical protein 0.832	4045 PHD 0.8315	8130 hypothetical protein 0.8287
bd1875 (bd1875) NA 0.8284	bd933 (bd933) NA 0.8271	263599 COG3899 0.824	25669 EEP superfamily 0.819

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CCL1		Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair...	-	75.154	1.35E-15	24 - 287	multi-dom	227640

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_5718	PHATRDRAFT_5718	143186	155888	450673	Cre14.g613900.t1.2	AT5G45190.1	354904

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0000074 -

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