39516 PLN02951
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39516 chr_2 PLN02951 1004633 1006238 - PLN02951

Synonyms

NCBI ID Ensembl Genomes exon ID
7444631 Thaps39516.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0360

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0217
 0.33

Most Highly Correlated Transcripts

5394

hypothetical protein
0.9094

20827

hypothetical protein
0.8806

4067

hypothetical protein
0.8745

22197

Aldo_ket_red
0.8688

6370

SpoU_methylase superfamily
0.8644

21623

hypothetical protein
0.8631

22720

hypothetical protein
0.8556

22731

hypothetical protein
0.8502

20829

HPP
0.8465

11841

hypothetical protein
0.8457

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 73.9069 1.74E-15 64 - 292 superfamily 100105
Radical_SAM superfamily Radical SAM superfamily. Enzymes of this family generate radicals by combining a 4Fe-4S cluster and... - 73.9069 1.74E-15 64 - 292 superfamily 100105
Mob_synth_C superfamily Molybdenum Cofactor Synthesis C; This region contains two iron-sulphur (3Fe-4S) binding sites.... - 117.711 9.46E-32 261 - 408 superfamily 115139
Mob_synth_C superfamily Molybdenum Cofactor Synthesis C; This region contains two iron-sulphur (3Fe-4S) binding sites.... - 117.711 9.46E-32 261 - 408 superfamily 115139
PLN02951 Molybderin biosynthesis protein CNX2 - 529.712 0 29 - 435 multi-dom 215513

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_15625 PHATRDRAFT_15625 182060 299193 442719 Cre13.g602901.t1.1 AT2G31955.2 264554

KEGG

KEGG description KEGG Pathway
Sulfur relay system map04122

GO Terms

GO:0003824 GO:0005506 GO:0006777 GO:0019008 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0005506

iron ion binding

Details: 
Interacting selectively and non-covalently with iron (Fe) ions.
GO Category: 
MF

GO:0006777

Mo-molybdopterin cofactor biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of the Mo-molybdopterin cofactor, essential for the catalytic activity of some enzymes. The cofactor consists of a mononuclear molybdenum (Mo) ion coordinated by one or two molybdopterin ligands.
GO Category: 
BP

GO:0019008

molybdopterin synthase complex

Details: 
A protein complex that possesses molybdopterin synthase activity. In E. coli, the complex is a heterotetramer consisting of two MoaD and two MoaE subunits.
GO Category: 
CC

Add comment

Log in to post comments