39813 Chloroa_b-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
39813 chr_3 Chloroa_b-bind superfamily 515727 518488 + Chloroa_b-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
Not available Thaps39813.4, Thaps39813.2, Thaps39813.3, Thaps39813.5, Thaps39813.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0022

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0262
 0.15

Most Highly Correlated Transcripts

270222

0.9971

bd1160

(bd1160) Chloroa_b-bind superfamily
0.9871

bd218

(bd218) Chloroa_b-bind superfamily
0.9859

bd1820

(bd1820) Fasciclin
0.984

21472

NA
0.9778

25402

(Lhcf10) fucoxanthin chl a/c light-harvesting protein, major type
0.9769

38715

PLN00120
0.9768

24080

(Lhcr1) fucoxanthin chl a/c light-harvesting protein, lhcr type
0.9735

26246

(Lhcr3) fucoxanthin chl a/c light-harvesting protein
0.9731

38122

Chloroa_b-bind superfamily
0.9729

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Chloroa_b-bind superfamily Chlorophyll A-B binding protein; Chlorophyll A-B binding protein. - 151.434 2.18E-45 25 - 201 superfamily 261492

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_22680 PHATRDRAFT_22680 Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0009765 GO:0016020 -

GO:0009765

photosynthesis, light harvesting

Details: 
Absorption and transfer of the energy absorbed from light photons between photosystem reaction centers.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

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