39955 ARMThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
39955	chr_3	ARM	1309126	1310380	-	ARM

Synonyms

NCBI ID	Ensembl Genomes exon ID
7441915	Thaps39955.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0474

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0004	0.42	0.0052 26000

Most Highly Correlated Transcripts

33039 SpoT 0.8803	264161 hypothetical protein 0.8713	38047 RCC1 0.8657	263610 COG3899 0.8542	27834 PcnB 0.8483	42283 RabGAP-TBC 0.8482
33092 RINGv superfamily 0.8474	11104 hypothetical protein 0.8433	1681 Telomere_reg-2 superfamily 0.8419	2050 hypothetical protein 0.8407

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
ARM superfamily		Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence...	-	78.8955	6.28E-18	55 - 183	superfamily	237987
ARM superfamily		Armadillo/beta-catenin-like repeats. An approximately 40 amino acid long tandemly repeated sequence...	-	78.8955	6.28E-18	55 - 183	superfamily	237987

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_1457	PHATRDRAFT_1457	140783	150610	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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