40107 (ief5) PLN03107Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
40107	chr_3	(ief5) PLN03107	2233723	2234936	+	PLN03107

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443809	Thaps40107.2, Thaps40107.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0048

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0114	0.48	0.0000000000017 0.0046

Most Highly Correlated Transcripts

22579 Sec62 superfamily 0.908	36007 Aldolase_II superfamily 0.8986	36525 PRK09427 0.8976	10493 Ribosomal_L7_L12 0.8933	3904 DUF3611 superfamily 0.8919	21905 hypothetical protein 0.891
55 hypothetical protein 0.8866	21939 Aldo_ket_red 0.8857	17859 DER1 superfamily 0.8852	21865 hypothetical protein 0.8833

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
S1_like superfamily		S1_like: Ribosomal protein S1-like RNA-binding domain. Found in a wide variety of RNA-associated...	-	71.0292	7.97E-17	86 - 156	superfamily	263921
PLN03107		eukaryotic translation initiation factor 5A; Provisional	-	270.042	3.19E-93	2 - 159	multi-dom	215580

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_17954	PHATRDRAFT_17954	270301	68559	361748	Cre02.g097400.t1.2	AT1G13950.1	285912

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0003743 GO:0006413 -

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