17859 DER1 superfamilyThalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
17859	chr_4	DER1 superfamily	2035511	2036590	+	DER1 superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7452214	Thaps17859.2, Thaps17859.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0052

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0066	0.42	13 340

Most Highly Correlated Transcripts

4604 hypothetical protein 0.9282	55 hypothetical protein 0.9127	9943 hypothetical protein 0.9094	4524 DHQS 0.9082	262977 NA 0.9079	21600 Armet superfamily 0.9049
22547 hypothetical protein 0.9001	36007 Aldolase_II superfamily 0.8997	38707 Aldolase_Class_I superfamily 0.899	38964 Chorismate_synthase 0.8986

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
DER1 superfamily		Der1-like family; The endoplasmic reticulum (ER) of the yeast Saccharomyces cerevisiae contains of...	-	113.144	8.89E-30	116 - 289	superfamily	266852

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_12572	PHATRDRAFT_12572	143368	196253	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Protein processing in endoplasmic reticulum	map04141

GO Terms

Not available -

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