4050 hypothetical protein
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
4050 chr_3 hypothetical protein 2435480 2440028 - hypothetical protein

Synonyms

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0411

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0187
 0.36

Most Highly Correlated Transcripts

4047

hypothetical protein
0.9219

5763

ERCC4
0.8951

23754

hypothetical protein
0.8832

23040

DUF1501 superfamily
0.8814

6357

hypothetical protein
0.8588

bd716

(bd716) MviM
0.8525

261181

Gly_transf_sug superfamily
0.8455

25600

hypothetical protein
0.8441

22947

zf-UBR
0.8375

20884

hypothetical protein
0.8321

Conserved Domains

Not available

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATR_33107 PHATR_33107 264968 Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006508 GO:0008237 GO:0008270 GO:0008766 GO:0016881 GO:0018169 -

GO:0006508

proteolysis

Details: 
The hydrolysis of proteins into smaller polypeptides and/or amino acids by cleavage of their peptide bonds.
GO Category: 
BP

GO:0008237

metallopeptidase activity

Details: 
Catalysis of the hydrolysis of peptide bonds by a mechanism in which water acts as a nucleophile, one or two metal ions hold the water molecule in place, and charged amino acid side chains are ligands for the metal ions.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0008766

UDP-N-acetylmuramoylalanyl-D-glutamyl-2,6-diaminopimelate-D-alanyl-D-alanine ligase activity

Details: 
Catalysis of the reaction: ATP + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-meso-2,6-diaminoheptanedioate + D-alanyl-D-alanine = ADP + phosphate + UDP-N-acetylmuramoyl-L-alanyl-D-glutamyl-6-carboxy-L-lysyl-D-alanyl-D-alanine.
GO Category: 
MF

GO:0016881

acid-amino acid ligase activity

Details: 
Catalysis of the ligation of an acid to an amino acid via a carbon-nitrogen bond, with the concomitant hydrolysis of the diphosphate bond in ATP or a similar triphosphate.
GO Category: 
MF

GO:0018169

ribosomal S6-glutamic acid ligase activity

Details: 
Catalysis of the posttranslational transfer of one or more glutamic acid residues to the C-terminus of ribosomal protein S6.
GO Category: 
MF

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