40675 (GALE2) PLN02240
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40675 chr_5 (GALE2) PLN02240 582536 583857 + PLN02240

Synonyms

NCBI ID Ensembl Genomes exon ID
7451777 Thaps40675.2, Thaps40675.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0187

Most Highly Correlated Transcripts

263269

(PSY3) Isoprenoid_Biosyn_C1 superfamily
0.9098

32226

CLPTM1 superfamily
0.8941

16295

FBPase
0.8906

35046

NADB_Rossmann superfamily
0.8887

4858

hypothetical protein
0.8858

261973

PKc_like superfamily
0.8834

263776

IMPase
0.8824

30701

PRK05279
0.8784

13448

Sec1
0.8773

3582

Rab6
0.8766

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
UDP_G4E_1_SDR_e UDP-glucose 4 epimerase, subgroup 1, extended (e) SDRs; UDP-glucose 4 epimerase (aka UDP-galactose-... cl09931 483.576 4.31E-171 8 - 374 specific 187558
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 483.576 4.31E-171 8 - 374 superfamily 263925
PLN02240 UDP-glucose 4-epimerase - 598.871 0 2 - 381 multi-dom 177883

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_27190 PHATRDRAFT_27190 170931 198481 Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Metabolic pathways map01100

GO Terms

GO:0003824 GO:0009225 GO:0003978 GO:0006012 GO:0005975 GO:0016857 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0009225

nucleotide-sugar metabolic process

Details: 
The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
BP

GO:0003978

UDP-glucose 4-epimerase activity

Details: 
Catalysis of the reaction: UDP-glucose = UDP-galactose.
GO Category: 
MF

GO:0006012

galactose metabolic process

Details: 
The chemical reactions and pathways involving galactose, the aldohexose galacto-hexose. D-galactose is widely distributed in combined form in plants, animals and microorganisms as a constituent of oligo- and polysaccharides; it also occurs in galactolipids and as its glucoside in lactose and melibiose.
GO Category: 
BP

GO:0005975

carbohydrate metabolic process

Details: 
The chemical reactions and pathways involving carbohydrates, any of a group of organic compounds based of the general formula Cx(H2O)y. Includes the formation of carbohydrate derivatives by the addition of a carbohydrate residue to another molecule.
GO Category: 
BP

GO:0016857

racemase and epimerase activity, acting on carbohydrates and derivatives

Details: 
Catalysis of a reaction that alters the configuration of one or more chiral centers in a carbohydrate molecule.
GO Category: 
MF

Add comment

Log in to post comments