40728 V_ATPase_I
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
40728 chr_5 V_ATPase_I 967953 970914 - V_ATPase_I

Synonyms

NCBI ID Ensembl Genomes exon ID
7449626 Thaps40728.2, Thaps40728.3, Thaps40728.4, Thaps40728.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0397

Most Highly Correlated Transcripts

263610

COG3899
0.8833

25653

hypothetical protein
0.8823

5273

DUF221 superfamily
0.8722

263391

EMP70 superfamily
0.8646

4726

hypothetical protein
0.8629

7121

DUF3684 superfamily
0.8624

263599

COG3899
0.8588

261357

NAD_binding_8 superfamily
0.8588

3331

Bac_rhamnosid superfamily
0.8582

24340

MFS
0.8574

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
V_ATPase_I V-type ATPase 116kDa subunit family; This family consists of the 116kDa V-type ATPase (vacuolar (H... - 508.462 4.30E-169 29 - 803 multi-dom 250661

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_28794 PHATRDRAFT_28794 253343 328287 464767 Cre04.g220350.t1.2 AT2G21410.1 359744

KEGG

KEGG description KEGG Pathway
Phagosome map04145

GO Terms

GO:0003676 GO:0015992 GO:0016020 GO:0003936 GO:0046933 GO:0046961 -

GO:0003676

nucleic acid binding

Details: 
Interacting selectively and non-covalently with any nucleic acid.
GO Category: 
MF

GO:0015992

proton transport

Details: 
The directed movement of protons (hydrogen ions) into, out of or within a cell, or between cells, by means of some agent such as a transporter or pore.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0003936

NA

Details: 
NA
GO Category: 
NA

GO:0046933

proton-transporting ATP synthase activity, rotational mechanism

Details: 
Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ADP + H2O + phosphate + H+(in) = ATP + H+(out), by a rotational mechanism.
GO Category: 
MF

GO:0046961

proton-transporting ATPase activity, rotational mechanism

Details: 
Catalysis of the transfer of protons from one side of a membrane to the other according to the reaction: ATP + H2O + H+(in) = ADP + phosphate + H+(out), by a rotational mechanism.
GO Category: 
MF

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