40978 PRP11Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
40978	chr_6	PRP11	652529	653311	+	PRP11

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443575	Thaps40978.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0053

Most Highly Correlated Transcripts

30701 PRK05279 0.9156	41655 Chloroa_b-bind 0.9126	23819 hypothetical protein 0.9009	261823 FIG superfamily 0.8996	1095 protease_HslV 0.8949	37934 GRX_PICOT_like 0.8938
19158 GRX_PICOT_like 0.892	37118 FeThRed_B 0.8917	268257 fabG 0.8891	269624 TIM_phosphate_binding superfamily 0.8882

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
CactinC_cactus superfamily		Cactus-binding C-terminus of cactin protein; CactinC_cactus is the C-terminal 200 residues of the...	-	82.016	1.01E-19	118 - 224	superfamily	264039
PRP11		Splicing factor 3a, subunit 2 [RNA processing and modification]	-	227.248	2.85E-74	2 - 229	multi-dom	227571

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_14572	PHATRDRAFT_14572	191765	167001	357810	Cre06.g252700.t1.2	AT2G32600.1	Not available

KEGG

KEGG description	KEGG Pathway
Spliceosome	map03040

GO Terms

GO:0003676 GO:0005634 GO:0008270 -

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