41045 (DGD3) dTDP_GD_SDR_e
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41045 chr_6 (DGD3) dTDP_GD_SDR_e 1003793 1005475 + dTDP_GD_SDR_e

Synonyms

NCBI ID Ensembl Genomes exon ID
7445959 Thaps41045.1, Thaps41045.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0156

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0121
 0.36

Most Highly Correlated Transcripts

bd1857

(bd1857) DnaJ
0.9043

269624

TIM_phosphate_binding superfamily
0.8889

25040

NA
0.8869

31829

CBS_like
0.8827

22673

NA
0.8827

39497

Sar1
0.8772

37118

FeThRed_B
0.8761

40788

NADB_Rossmann superfamily
0.8752

16295

FBPase
0.8684

36037

Trypsin_2
0.8628

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
dTDP_GD_SDR_e dTDP-D-glucose 4,6-dehydratase, extended (e) SDRs; This subgroup contains dTDP-D-glucose 4,6-... cl09931 475.501 4.71E-167 96 - 412 specific 187557
NADB_Rossmann superfamily Rossmann-fold NAD(P)(+)-binding proteins; A large family of proteins that share a Rossmann-fold NAD... - 475.501 4.71E-167 96 - 412 superfamily 263925
RfbB dTDP-D-glucose 4,6-dehydratase [Cell envelope biogenesis, outer membrane] - 405.071 4.81E-139 96 - 431 multi-dom 224013

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_47152 PHATRDRAFT_47152 176468 249678 367182 Cre02.g083800.t2.1 AT1G53500.1 Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003824 GO:0009225 GO:0008152 GO:0016491 GO:0008460 -

GO:0003824

catalytic activity

Details: 
Catalysis of a biochemical reaction at physiological temperatures. In biologically catalyzed reactions, the reactants are known as substrates, and the catalysts are naturally occurring macromolecular substances known as enzymes. Enzymes possess specific binding sites for substrates, and are usually composed wholly or largely of protein, but RNA that has catalytic activity (ribozyme) is often also regarded as enzymatic.
GO Category: 
MF

GO:0009225

nucleotide-sugar metabolic process

Details: 
The cellular chemical reactions and pathways involving nucleotide-sugars, any nucleotide in which the distal phosphoric residue of a nucleoside 5'-diphosphate is in glycosidic linkage with a monosaccharide or monosaccharide derivative.
GO Category: 
BP

GO:0008152

metabolic process

Details: 
The chemical reactions and pathways, including anabolism and catabolism, by which living organisms transform chemical substances. Metabolic processes typically transform small molecules, but also include macromolecular processes such as DNA repair and replication, and protein synthesis and degradation.
GO Category: 
BP

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0008460

dTDP-glucose 4,6-dehydratase activity

Details: 
Catalysis of the reaction: dTDP-glucose = dTDP-4-dehydro-6-deoxy-alpha-D-glucose + H(2)O.
GO Category: 
MF

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