41113 (DES3) PLN03199
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
41113 chr_6 (DES3) PLN03199 1325036 1326733 - PLN03199

Synonyms

NCBI ID Ensembl Genomes exon ID
7453274 Thaps41113.2, Thaps41113.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0014

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0203
 0.30

Most Highly Correlated Transcripts

bd760

(bd760) ZnMc superfamily
0.8938

bd1658

(bd1658) NA
0.8833

32546

(DES1) Delta6-FADS-like
0.8764

bd1809

(bd1809) ZnMc_pappalysin_like
0.8721

23291

hypothetical protein
0.8679

bd1216

(bd1216) Delta6-FADS-like
0.8672

38306

Chloroa_b-bind
0.8662

261275

ThylakoidFormat superfamily
0.8596

31851

BKR_SDR_c
0.8591

bd1403

(bd1403) NA
0.858

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
Delta6-FADS-like The Delta6 Fatty Acid Desaturase (Delta6-FADS)-like CD includes the integral-membrane enzymes:... cl00615 202.872 5.19E-62 162 - 448 specific 239583
Membrane-FADS-like superfamily The membrane fatty acid desaturase (Membrane_FADS)-like CD includes membrane FADSs, alkane... - 202.872 5.19E-62 162 - 448 superfamily 260534
Cyt-b5 Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a... cl02041 86.8683 6.22E-21 26 - 96 specific 249651
Cyt-b5 superfamily Cytochrome b5-like Heme/Steroid binding domain; This family includes heme binding domains from a... - 86.8683 6.22E-21 26 - 96 superfamily 261158
PLN03199 delta6-acyl-lipid desaturase-like protein; Provisional - 1022.66 0 1 - 484 multi-dom 178740

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_29488 PHATRDRAFT_29488 202833 306546 Not available Not available Not available 356130

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0016491 GO:0006636 GO:0016020 GO:0016717 -

GO:0016491

oxidoreductase activity

Details: 
Catalysis of an oxidation-reduction (redox) reaction, a reversible chemical reaction in which the oxidation state of an atom or atoms within a molecule is altered. One substrate acts as a hydrogen or electron donor and becomes oxidized, while the other acts as hydrogen or electron acceptor and becomes reduced.
GO Category: 
MF

GO:0006636

unsaturated fatty acid biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of an unsaturated fatty acid, any fatty acid containing one or more double bonds between carbon atoms.
GO Category: 
BP

GO:0016020

membrane

Details: 
Double layer of lipid molecules that encloses all cells, and, in eukaryotes, many organelles; may be a single or double lipid bilayer; also includes associated proteins.
GO Category: 
CC

GO:0016717

oxidoreductase activity, acting on paired donors, with oxidation of a pair of donors resulting in the reduction of molecular oxygen to two molecules of water

Details: 
Catalysis of an oxidation-reduction (redox) reaction in which hydrogen or electrons are transferred from each of two donors, and molecular oxygen is reduced to two molecules of water.
GO Category: 
MF

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