41953 RtcBThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
41953	chr_11a	RtcB	117061	118813	+	RtcB

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443254	Thaps41953.2, Thaps41953.1, Thaps41953.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0222

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0184	0.33	0.00067 4.8

Most Highly Correlated Transcripts

bd1876 (bd1876) NatB_MDM20 superfamily 0.9283	32395 RNA_pol 0.8958	23922 (Tp_AP2-EREBP9) regulator [Rayko] 0.887	11606 hypothetical protein 0.8714	3416 TPR 0.8578	262625 gatB 0.856
22886 CLU 0.8525	264090 AAA_12 0.8522	22840 hypothetical protein 0.8512	20621 hypothetical protein 0.8509

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
RtcB		Uncharacterized conserved protein [Function unknown]	cl17455	498.031	1.63E-173	1 - 480	specific	224604
RtcB superfamily		Uncharacterized conserved protein [Function unknown]	-	498.031	1.63E-173	1 - 480	superfamily	266696
RtcB		tRNA-splicing ligase RtcB; This family of RNA ligases (EC:6.5.1.3) join 2',3'-...	-	555.673	0	39 - 480	multi-dom	250393

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	194002	Cre11.g467766.t1.1	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0005554 -

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