42508 WD40Thalassiosira pseudonana

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
42508	chr_15	WD40	414461	416285	-	WD40

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442005	Thaps42508.1, Thaps42508.3, Thaps42508.2

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0066

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0182	0.48	0.011 8

Most Highly Correlated Transcripts

12899 AAA 0.932	bd1662 (bd1662) TIGR00367 0.9218	bd258 (bd258) HU 0.9121	16295 FBPase 0.9103	264556 FBPase 0.9014	bd1765 (bd1765) NA 0.8872
21455 hypothetical protein 0.8842	1499 (CTS1) PTZ00399 0.8831	35728 FtsZ_type1 0.8796	23725 Rubis-subs-bind superfamily 0.8748

Conserved Domains

Name	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
WD40 superfamily	WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	155.186	4.15E-43	165 - 453	superfamily	238121
WD40 superfamily	WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions...	-	155.186	4.15E-43	165 - 453	superfamily	238121
CAF1C_H4-bd superfamily	Histone-binding protein RBBP4 or subunit C of CAF1 complex; The CAF-1 complex is a conserved...	-	98.4601	3.52E-25	47 - 116	superfamily	256943
CAF1C_H4-bd superfamily	Histone-binding protein RBBP4 or subunit C of CAF1 complex; The CAF-1 complex is a conserved...	-	98.4601	3.52E-25	47 - 116	superfamily	256943
COG2319	FOG: WD40 repeat [General function prediction only]	-	130.594	2.24E-33	178 - 457	multi-dom	225201

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_17948	PHATRDRAFT_17948	210048	210354	350324	Cre12.g523200.t1.1	AT5G58230.1	260120

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

GO:0031177 GO:0004147 GO:0004405 GO:0004406 GO:0008080 GO:0008374 GO:0008415 GO:0008951 GO:0016406 GO:0016407 GO:0016408 GO:0016409 GO:0016410 GO:0016411 GO:0016412 GO:0016413 GO:0016414 GO:0016415 GO:0016416 GO:0016417 GO:0016418 GO:0016419 GO:0016420 GO:0016454 GO:0016747 GO:0016748 GO:0016749 GO:0016750 GO:0016751 GO:0016752 GO:0016753 GO:0018030 GO:0018031 GO:0018711 GO:0018712 GO:0018713 GO:0019105 GO:0019107 GO:0019186 GO:0019705 GO:0019706 GO:0019707 GO:0046941 -

GO:0031177

phosphopantetheine binding

Details:

Interacting selectively and non-covalently with phosphopantetheine, the vitamin pantetheine 4'-(dihydrogen phosphate).

GO Category:

GO:0004147

dihydrolipoamide branched chain acyltransferase activity

Details:

Catalysis of the reaction: acyl-CoA + dihydrolipoamide = CoA + S-acyldihydrolipoamide, where the acyl group is a branched chain.

GO Category:

GO:0004405

Details:

GO Category:

GO:0004406

Details:

GO Category:

GO:0008080

N-acetyltransferase activity

Details:

Catalysis of the transfer of an acetyl group to a nitrogen atom on the acceptor molecule.

GO Category:

GO:0008374

O-acyltransferase activity

Details:

Catalysis of the transfer of an acyl group to an oxygen atom on the acceptor molecule.

GO Category:

GO:0008415

Details:

GO Category:

GO:0008951

palmitoleoyl [acyl-carrier-protein]-dependent acyltransferase activity

Details:

Catalysis of the reaction: a palmitoleoyl-[acyl-carrier protein] + alpha-KDO-(2->4)-alpha-KDO-(2->6)-lipid IVA = KDO2-(palmitoleoyl)-lipid IVA + a holo-[acyl-carrier protein].

GO Category:

GO:0016406

carnitine O-acyltransferase activity

Details:

Catalysis of the transfer of an acyl group to an oxygen atom on the carnitine molecule.

GO Category:

GO:0016407

acetyltransferase activity

Details:

Catalysis of the transfer of an acetyl group to an acceptor molecule.

GO Category:

GO:0016408

C-acyltransferase activity

Details:

Catalysis of the transfer of an acyl group to a carbon atom on the acceptor molecule.

GO Category:

GO:0016409

palmitoyltransferase activity

Details:

Catalysis of the transfer of a palmitoyl (CH3-[CH2]14-CO-) group to an acceptor molecule.

GO Category:

GO:0016410

N-acyltransferase activity

Details:

Catalysis of the transfer of an acyl group to a nitrogen atom on the acceptor molecule.

GO Category:

GO:0016411

acylglycerol O-acyltransferase activity

Details:

Catalysis of the transfer of an acyl group to an oxygen atom on the acylglycerol molecule.

GO Category:

GO:0016412

serine O-acyltransferase activity

Details:

Catalysis of the transfer of an acyl group to an oxygen atom on the serine molecule.

GO Category:

GO:0016413

O-acetyltransferase activity

Details:

Catalysis of the transfer of an acetyl group to an oxygen atom on the acceptor molecule.

GO Category:

GO:0016414

O-octanoyltransferase activity

Details:

Catalysis of the transfer of an octanoyl group to an oxygen atom on the acceptor molecule.

GO Category:

GO:0016415

octanoyltransferase activity

Details:

Catalysis of the transfer of an octanoyl (CH3-[CH2]6-CO-) group to an acceptor molecule.

GO Category:

GO:0016416

O-palmitoyltransferase activity

Details:

Catalysis of the transfer of a palmitoyl group to an oxygen atom on the acceptor molecule.

GO Category:

GO:0016417

S-acyltransferase activity

Details:

Catalysis of the transfer of an acyl group to a sulfur atom on the acceptor molecule.

GO Category:

GO:0016418

S-acetyltransferase activity

Details:

Catalysis of the transfer of an acetyl group to a sulfur atom on the acceptor molecule.

GO Category:

GO:0016419

S-malonyltransferase activity

Details:

Catalysis of the transfer of a malonyl group to a sulfur atom on the acceptor molecule.

GO Category:

GO:0016420

malonyltransferase activity

Details:

Catalysis of the transfer of a malonyl (HOOC-CH2-CO-) group to an acceptor molecule.

GO Category:

GO:0016454

C-palmitoyltransferase activity

Details:

Catalysis of the transfer of a palmitoyl group to a carbon atom on the acceptor molecule.

GO Category:

GO:0016747

transferase activity, transferring acyl groups other than amino-acyl groups

Details:

Catalysis of the transfer of an acyl group, other than amino-acyl, from one compound (donor) to another (acceptor).

GO Category:

GO:0016748

succinyltransferase activity

Details:

Catalysis of the transfer of a succinyl (3-carboxypropanoyl) group to an acceptor molecule.

GO Category:

GO:0016749

N-succinyltransferase activity

Details:

Catalysis of the transfer of a succinyl group to a nitrogen atom on the acceptor molecule.

GO Category:

GO:0016750

O-succinyltransferase activity

Details:

Catalysis of the transfer of a succinyl group to an oxygen atom on the acceptor molecule.

GO Category:

GO:0016751

S-succinyltransferase activity

Details:

Catalysis of the transfer of a succinyl group to a sulfur atom on the acceptor molecule.

GO Category:

GO:0016752

sinapoyltransferase activity

Details:

Catalysis of the transfer of a sinapoyl group to an acceptor molecule.

GO Category:

GO:0016753

O-sinapoyltransferase activity

Details:

Catalysis of the transfer of a sinapoyl group to an oxygen atom on the acceptor molecule.

GO Category:

GO:0018030

peptidyl-lysine N6-myristoyltransferase activity

Details:

Catalysis of the transfer of a myristoyl group to the N6 nitrogen atom on a lysine residue of a peptide or protein molecule.

GO Category:

GO:0018031

peptidyl-lysine N6-palmitoyltransferase activity

Details:

Catalysis of the transfer of a palmitoyl group to the N6 nitrogen atom on a lysine residue of a peptide or protein molecule.

GO Category:

GO:0018711

benzoyl acetate-CoA thiolase activity

Details:

Catalysis of the reaction: benzoyl acetyl-CoA + CoA = acetyl-CoA + benzoyl-CoA.

GO Category:

GO:0018712

3-hydroxybutyryl-CoA thiolase activity

Details:

Catalysis of the reaction: 3-hydroxy-5-oxohexanoyl-CoA + CoASH = 3-hydroxybutyryl-CoA + acetyl-CoA.

GO Category:

GO:0018713

3-ketopimelyl-CoA thiolase activity

Details:

Catalysis of the reaction: 3-ketopimeloyl-CoA + CoA = glutaryl-CoA + acetyl-CoA.

GO Category:

GO:0019105

N-palmitoyltransferase activity

Details:

Catalysis of the transfer of a palmitoyl group to a nitrogen atom on the acceptor molecule.

GO Category:

GO:0019107

myristoyltransferase activity

Details:

Catalysis of the transfer of a myristoyl (CH3-[CH2]12-CO-) group to an acceptor molecule.

GO Category:

GO:0019186

acyl-CoA N-acyltransferase activity

Details:

Catalysis of the transfer of an acyl group from acyl-CoA to a nitrogen atom on an acceptor molecule.

GO Category:

GO:0019705

protein-cysteine S-myristoyltransferase activity

Details:

Catalysis of the transfer of a myristoyl group to a sulfur atom on a cysteine residue of a protein molecule.

GO Category:

GO:0019706

protein-cysteine S-palmitoyltransferase activity

Details:

Catalysis of the transfer of a palmitoyl group to a sulfur atom on the cysteine of a protein molecule.

GO Category:

GO:0019707

protein-cysteine S-acyltransferase activity

Details:

Catalysis of the transfer of an acyl group to a sulfur atom on the cysteine of a protein molecule.

GO Category:

GO:0046941

azetidine-2-carboxylic acid acetyltransferase activity

Details:

Catalysis of the reaction: L-azetidine-2-carboxylic acid + acetyl-CoA = CoA-SH + N-acetyl azetidine-2-carboxylic acid.

GO Category: