444 zinc_ribbon_6
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
444 chr_5 zinc_ribbon_6 309247 312018 + zinc_ribbon_6

Synonyms

NCBI ID Ensembl Genomes exon ID
7449657 Thaps444.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0113

Most Highly Correlated Transcripts

41655

Chloroa_b-bind
0.9276

7588

hypothetical protein
0.9162

40704

WD40
0.9136

30701

PRK05279
0.9127

19059

SynMuv_product superfamily
0.9081

261400

NA
0.9075

262828

vascular plant-like receptor-like protein kinase
0.9024

269624

TIM_phosphate_binding superfamily
0.9021

19826

LSm1
0.8984

21909

(Tp_bZIP17) regulator [Rayko]
0.8966

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
zinc_ribbon_6 superfamily Zinc-ribbon; This is a typical zinc-ribbon finger, with each pair of zinc-ligands coming from more-... - 103.002 5.31E-26 849 - 907 superfamily 258737
zinc_ribbon_6 superfamily Zinc-ribbon; This is a typical zinc-ribbon finger, with each pair of zinc-ligands coming from more-... - 103.002 5.31E-26 849 - 907 superfamily 258737
zf-CHY CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many... cl19861 70.4263 1.58E-14 662 - 748 specific 253220
zf-CHY superfamily CHY zinc finger; This family of domains are likely to bind to zinc ions. They contain many... - 70.4263 1.58E-14 662 - 748 superfamily 268214

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_12097 PHATRDRAFT_12097 270359 301302 Not available Cre05.g248550.t1.1 AT1G74770.1 323450

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0000151 GO:0004842 GO:0008270 GO:0016567 -

GO:0000151

ubiquitin ligase complex

Details: 
A protein complex that includes a ubiquitin-protein ligase and other proteins that may confer substrate specificity on the complex.
GO Category: 
CC

GO:0004842

ubiquitin-protein ligase activity

Details: 
Catalysis of the reaction: ATP + ubiquitin + protein lysine = AMP + diphosphate + protein N-ubiquityllysine.
GO Category: 
MF

GO:0008270

zinc ion binding

Details: 
Interacting selectively and non-covalently with zinc (Zn) ions.
GO Category: 
MF

GO:0016567

protein ubiquitination

Details: 
The process in which one or more ubiquitin groups are added to a protein.
GO Category: 
BP

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