511 (GBP1) PRK09601
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
511 chr_6 (GBP1) PRK09601 503461 504798 - PRK09601

Synonyms

NCBI ID Ensembl Genomes exon ID
7451172 Thaps511.1, Thaps511.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0043

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0088
 0.37

Most Highly Correlated Transcripts

268062

PRK14293
0.9282

28100

DHBP_synthase
0.9247

273

PRK04004
0.8964

6610

hypothetical protein
0.8938

33161

prfA
0.8854

268271

PRK10867
0.8845

2611

hypothetical protein
0.884

260833

Uup
0.8833

9749

hypothetical protein
0.8819

35164

acolac_lg
0.8792

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
YchF YchF GTPase; YchF is a member of the Obg family, which includes four other subfamilies of GTPases:... cl17170 418.401 9.17E-146 54 - 324 specific 206687
Ras_like_GTPase superfamily Rat sarcoma (Ras)-like superfamily of small guanosine triphosphatases (GTPases); Ras-like GTPase... - 418.401 9.17E-146 54 - 324 superfamily 266525
TGS_YchF_C TGS_YchF_C: This subfamily represents TGS domain-containing YchF GTP-binding protein, a universally... cl15768 162.359 7.09E-49 326 - 408 specific 133440
TGS superfamily The TGS domain, named after the ThrRS, GTPase, and SpoT/RelA proteins where it occurs, is... - 162.359 7.09E-49 326 - 408 superfamily 265779
PRK09601 GTP-binding protein YchF; Reviewed - 633.256 0 48 - 410 multi-dom 236583

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_37067 PHATRDRAFT_37067 180204 212392 64403 Cre13.g562150.t1.2 AT1G56050.1 296986

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0005525 GO:0005554 -

GO:0005525

GTP binding

Details: 
Interacting selectively and non-covalently with GTP, guanosine triphosphate.
GO Category: 
MF

GO:0005554

NA

Details: 
NA
GO Category: 
NA

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