5185 RPN7 superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5185 chr_5 RPN7 superfamily 564071 565965 + RPN7 superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7449716 Thaps5185.2, Thaps5185.3, Thaps5185.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0366

Most Highly Correlated Transcripts

4108

hypothetical protein
0.9349

13448

Sec1
0.9115

1244

hypothetical protein
0.9074

5256

hypothetical protein
0.9046

11180

hypothetical protein
0.8971

21119

hypothetical protein
0.8961

27811

PRK07777
0.8884

27686

PLN02750
0.8842

22142

hypothetical protein
0.8841

268435

hypothetical protein
0.8828

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
RPN7 superfamily 26S proteasome subunit RPN7; RPN7 (known as the non ATPase regulatory subunit 6 in higher... - 82.2337 3.77E-18 144 - 322 superfamily 256084
PCI PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). cl02111 65.3304 7.30E-13 342 - 453 specific 250589
PCI superfamily PCI domain; This domain has also been called the PINT motif (Proteasome, Int-6, Nip-1 and TRIP-15). - 65.3304 7.30E-13 342 - 453 superfamily 261183

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54772 PHATRDRAFT_54772 266455 323717 429574 Cre05.g234300.t1.2 AT3G61140.1 346736

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004550 GO:0005524 GO:0006183 GO:0006228 GO:0006241 -

GO:0004550

nucleoside diphosphate kinase activity

Details: 
Catalysis of the reaction: ATP + nucleoside diphosphate = ADP + nucleoside triphosphate.
GO Category: 
MF

GO:0005524

ATP binding

Details: 
Interacting selectively and non-covalently with ATP, adenosine 5'-triphosphate, a universally important coenzyme and enzyme regulator.
GO Category: 
MF

GO:0006183

GTP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of GTP, guanosine triphosphate.
GO Category: 
BP

GO:0006228

UTP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of UTP, uridine (5'-)triphosphate.
GO Category: 
BP

GO:0006241

CTP biosynthetic process

Details: 
The chemical reactions and pathways resulting in the formation of CTP, cytidine 5'-triphosphate.
GO Category: 
BP

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