5631 (APS4) APS2
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5631 chr_5 (APS4) APS2 1682627 1683275 - APS2

Synonyms

NCBI ID Ensembl Genomes exon ID
7448187 Thaps5631.3, Thaps5631.2, Thaps5631.1

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0186

Most Highly Correlated Transcripts

6316

hypothetical protein
0.9283

13448

Sec1
0.9076

16961

S_TKc
0.9076

5552

hypothetical protein
0.9074

22589

EMP24_GP25L
0.9054

5641

hypothetical protein
0.9015

2855

hypothetical protein
0.9014

261863

GlcNAc superfamily
0.9003

261527

RagA_like
0.9002

3287

hypothetical protein
0.8993

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
APS2 Clathrin adaptor complex, small subunit [Intracellular trafficking and secretion] cl02092 144.476 3.77E-44 1 - 146 specific 227363
Clat_adaptor_s superfamily Clathrin adaptor complex small chain; Clathrin adaptor complex small chain. - 144.476 3.77E-44 1 - 146 superfamily 261170

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available PHATRDRAFT_54718 PHATRDRAFT_54718 231127 307545 Not available Cre07.g330950.t1.2 AT2G19790.1 555587

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0006886 GO:0030125 -

GO:0006886

intracellular protein transport

Details: 
The directed movement of proteins in a cell, including the movement of proteins between specific compartments or structures within a cell, such as organelles of a eukaryotic cell.
GO Category: 
BP

GO:0030125

clathrin vesicle coat

Details: 
A clathrin coat found on a vesicle.
GO Category: 
CC

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