5776 PROCN superfamilyThalassiosira pseudonana | Diatom Portal

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Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
5776	chr_5	PROCN superfamily	2076056	2080925	-	PROCN superfamily

Synonyms

NCBI ID	Ensembl Genomes exon ID
7442286	Thaps5776.7, Thaps5776.6, Thaps5776.2, Thaps5776.5, Thaps5776.4, Thaps5776.3, Thaps5776.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0259

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0147	0.38	0.21 17000

Most Highly Correlated Transcripts

2959 hypothetical protein 0.9527	992 hypothetical protein 0.9509	6657 hypothetical protein 0.9489	5777 PRO8NT 0.9465	2958 PROCN 0.9354	5779 hypothetical protein 0.932
11434 hypothetical protein 0.9259	4866 PROCN 0.9253	4865 hypothetical protein 0.9234	6656 PROCN 0.9143

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
PROCN superfamily		PROCN (NUC071) domain; The PROCN domain is the central domain in pre-mRNA splicing factors of PRO8...	-	366.364	4.17E-114	1 - 234	superfamily	116688
MPN superfamily		Mpr1p, Pad1p N-terminal (MPN) domains; MPN (also known as Mov34, PAD-1, JAMM, JAB, MPN+) domains...	-	203.242	2.43E-58	722 - 909	superfamily	265414
RRM_4 superfamily		RNA recognition motif of the spliceosomal PrP8; The large RNA-protein complex of the spliceosome...	-	130.826	4.92E-35	410 - 503	superfamily	192639
RRM_4 superfamily		RNA recognition motif of the spliceosomal PrP8; The large RNA-protein complex of the spliceosome...	-	130.826	4.92E-35	410 - 503	superfamily	192639
RNase_H_like superfamily		Ribonuclease H-like superfamily, including RNase H, HI, HII, HIII, and RNase-like domain IV of...	-	99.7284	8.08E-23	629 - 674	superfamily	265450

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available		Not available	Not available	Not available	Not available	Not available	AT1G80070.1	541614

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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