5909 (Tp_HSF_2.3c) HSF_DNA-bind superfamily
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
5909 chr_6 (Tp_HSF_2.3c) HSF_DNA-bind superfamily 227522 229048 - HSF_DNA-bind superfamily

Synonyms

NCBI ID Ensembl Genomes exon ID
7451115 Thaps5909.1, Thaps5909.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0485

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0124
 0.37

Most Highly Correlated Transcripts

bd1749

(bd1749) NA
0.9213

31001

Y_phosphoryl
0.8407

20989

hypothetical protein
0.8391

19048

S_TKc
0.8335

269115

hypothetical protein
0.8324

586

PTZ00018
0.8283

260939

DSPc
0.8273

40831

Tryp_SPc
0.8139

bd1803

(bd1803) NA
0.8114

7379

(Tp_HSF_2.6d) HSF_DNA-bind superfamily
0.8064

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
HSF_DNA-bind superfamily HSF-type DNA-binding; HSF-type DNA-binding. - 82.5478 3.23E-19 119 - 217 superfamily 264552

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available Not available Not available Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0003700 GO:0005634 GO:0006355 GO:0003677 -

GO:0003700

sequence-specific DNA binding transcription factor activity

Details: 
Interacting selectively and non-covalently with a specific DNA sequence in order to modulate transcription. The transcription factor may or may not also interact selectively with a protein or macromolecular complex.
GO Category: 
MF

GO:0005634

nucleus

Details: 
A membrane-bounded organelle of eukaryotic cells in which chromosomes are housed and replicated. In most cells, the nucleus contains all of the cell's chromosomes except the organellar chromosomes, and is the site of RNA synthesis and processing. In some species, or in specialized cell types, RNA metabolism or DNA replication may be absent.
GO Category: 
CC

GO:0006355

regulation of transcription, DNA-templated

Details: 
Any process that modulates the frequency, rate or extent of cellular DNA-templated transcription.
GO Category: 
BP

GO:0003677

DNA binding

Details: 
Any molecular function by which a gene product interacts selectively and non-covalently with DNA (deoxyribonucleic acid).
GO Category: 
MF

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