6066 APG6Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
6066	chr_6	APG6	621874	623487	-	APG6

Synonyms

NCBI ID	Ensembl Genomes exon ID
7443568	Thaps6066.4, Thaps6066.2, Thaps6066.1, Thaps6066.3

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0108

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0071	0.35	1.7 24

Most Highly Correlated Transcripts

6729 FUSC_2 0.9047	38602 Ndh 0.9031	29322 AAT_I superfamily 0.891	1855 hypothetical protein 0.8897	22644 hypothetical protein 0.888	25019 hypothetical protein 0.8855
263810 PTZ00430 0.8822	21429 hypothetical protein 0.8778	10889 hypothetical protein 0.8708	10523 hypothetical protein 0.8707

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
APG6		Autophagy protein Apg6; In yeast, 15 Apg proteins coordinate the formation of autophagosomes....	-	72.2305	2.48E-14	162 - 438	multi-dom	252382

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_43402	PHATRDRAFT_43402	252930	226789	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Regulation of autophagy	map04140

GO Terms

Not available -

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