7123 REX4_like
Thalassiosira pseudonana

Genome Browser

Summary

Chromosome Product Transcript Start End Strand Short Name
7123 chr_7 REX4_like 1340447 1341777 - REX4_like

Synonyms

NCBI ID Ensembl Genomes exon ID
7447118 Thaps7123.3, Thaps7123.1, Thaps7123.2

Hierarchical Clustering

Expression Profile Conditional Changes Cluster Dendrogram
Thaps_hclust_0385

Motif-Guided Biclusters

Normalized Mean Residue
Thaps_bicluster_0285
 0.31

Most Highly Correlated Transcripts

21237

hypothetical protein
0.9287

23253

hypothetical protein
0.9191

262217

hypothetical protein
0.9111

25618

hypothetical protein
0.9082

24698

hypothetical protein
0.9034

2641

DOMON_DOH
0.8964

4732

hypothetical protein
0.8736

21880

hypothetical protein
0.8704

9502

hypothetical protein
0.868

10109

hypothetical protein
0.8577

Conserved Domains

Name CD Accession Definition Superfamily Bitscore E-Value From - To Hit Type PSSM ID
REX4_like DEDDh 3'-5' exonuclease domain of RNA exonuclease 4, XPMC2, Interferon Stimulated... cl10012 215.843 1.20E-68 96 - 294 specific 99847
DnaQ_like_exo superfamily DnaQ-like (or DEDD) 3'-5' exonuclease domain superfamily; The DnaQ-like... - 215.843 1.20E-68 96 - 294 superfamily 263941

Homologs in Other Species

T. pseudonana P. tricornutum P. tricornutum DiatomCyc F. cylindrus Pseudo-nitzschia multiseries E. huxleyi C. reinhardtii A. thaliana P. sojae
Not available Not available Not available 216656 235048 Not available Not available Not available

KEGG

KEGG description KEGG Pathway
Not available Not available

GO Terms

GO:0004527 GO:0005622 GO:0004535 -

GO:0004527

exonuclease activity

Details: 
Catalysis of the hydrolysis of ester linkages within nucleic acids by removing nucleotide residues from the 3' or 5' end.
GO Category: 
MF

GO:0005622

intracellular

Details: 
The living contents of a cell; the matter contained within (but not including) the plasma membrane, usually taken to exclude large vacuoles and masses of secretory or ingested material. In eukaryotes it includes the nucleus and cytoplasm.
GO Category: 
CC

GO:0004535

poly(A)-specific ribonuclease activity

Details: 
Catalysis of the exonucleolytic cleavage of poly(A) to 5'-AMP.
GO Category: 
MF

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