8428 APG6Thalassiosira pseudonana | Diatom Portal

Genome Browser

Summary

	Chromosome	Product	Transcript Start	End	Strand	Short Name
8428	chr_10	APG6	565384	567334	-	APG6

Synonyms

NCBI ID	Ensembl Genomes exon ID
7445897	Thaps8428.1

Hierarchical Clustering

Expression Profile	Conditional Changes	Cluster Dendrogram	Discovered Potential cis-Regulatory Motifs
Thaps_hclust_0467

Motif-Guided Biclusters

	Normalized Mean Residue	Discovered Potential cis-Regulatory Motifs
Thaps_bicluster_0018	0.42

Most Highly Correlated Transcripts

270222 0.9363	25512 hypothetical protein 0.8942	40200 TRX_reduct 0.885	268443 SAICAR_synt_Sc 0.883	1676 hypothetical protein 0.8811	269169 Beach 0.879
267979 HCO3_cotransp superfamily 0.8688	2622 hypothetical protein 0.8681	5309 Methyltransf_31 0.8674	23262 DUF221 0.8655

Conserved Domains

Name	CD Accession	Definition	Superfamily	Bitscore	E-Value	From - To	Hit Type	PSSM ID
APG6		Autophagy protein Apg6; In yeast, 15 Apg proteins coordinate the formation of autophagosomes....	-	115.373	2.34E-28	227 - 646	multi-dom	252382

Homologs in Other Species

T. pseudonana	P. tricornutum	P. tricornutum DiatomCyc	F. cylindrus	Pseudo-nitzschia multiseries	E. huxleyi	C. reinhardtii	A. thaliana	P. sojae
Not available	PHATRDRAFT_31423	PHATRDRAFT_31423	234674	210954	Not available	Not available	Not available	Not available

KEGG

KEGG description	KEGG Pathway
Not available	Not available

GO Terms

Not available -

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